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Mutant Information

Mutant Name	FN4009-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4009-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7814749 C-T Homo STOP_GAINED OsKitaake01g098100
SBS Chr1 18788804 G-A Hetero INTERGENIC
SBS Chr1 37785836 T-C Hetero INTERGENIC
SBS Chr3 36238069 A-G Homo INTRON
SBS Chr4 7097772 A-C Hetero INTERGENIC
SBS Chr4 7867344 G-T Hetero INTERGENIC
SBS Chr5 6030679 C-T Hetero INTERGENIC
SBS Chr5 18883243 T-A Homo INTERGENIC
SBS Chr6 12925039 C-T Hetero INTERGENIC
SBS Chr6 18067073 T-A Hetero INTERGENIC
SBS Chr6 28340644 C-G Homo INTERGENIC
SBS Chr7 8349770 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g090850
SBS Chr7 9311509 T-A Hetero INTERGENIC
SBS Chr8 4810319 T-G Homo INTERGENIC
SBS Chr8 26331306 A-G Hetero INTERGENIC
SBS Chr9 7796051 C-T Hetero INTERGENIC
SBS Chr9 13484492 C-G Hetero INTERGENIC
SBS Chr9 18810991 G-T Homo UTR_3_PRIME
SBS Chr9 21225104 C-T Hetero INTERGENIC
SBS Chr10 17371895 C-A Homo INTERGENIC
SBS Chr11 12197656 T-C Hetero INTERGENIC
SBS Chr11 21128158 C-A Hetero INTERGENIC
SBS Chr12 4358612 G-C Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 7447863 7447865 2
Deletion Chr8 7873788 7873792 4
Deletion Chr5 9685610 9685612 2
Deletion Chr2 12398163 12398165 2
Deletion Chr5 12529778 12530088 310
Deletion Chr4 13171382 13171383 1
Deletion Chr2 15720740 15720747 7
Deletion Chr3 19737044 19737053 9

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 28944102 28944105 2
Insertion Chr3 26310606 26310609 2
Insertion Chr5 10944141 10944143 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 22434372 22547654 OsKitaake12g176901
Inversion Chr12 22434383 22547655 OsKitaake12g176901

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7814749	C-T	Homo	STOP_GAINED	OsKitaake01g098100
SBS	Chr1	18788804	G-A	Hetero	INTERGENIC
SBS	Chr1	37785836	T-C	Hetero	INTERGENIC
SBS	Chr3	36238069	A-G	Homo	INTRON
SBS	Chr4	7097772	A-C	Hetero	INTERGENIC
SBS	Chr4	7867344	G-T	Hetero	INTERGENIC
SBS	Chr5	6030679	C-T	Hetero	INTERGENIC
SBS	Chr5	18883243	T-A	Homo	INTERGENIC
SBS	Chr6	12925039	C-T	Hetero	INTERGENIC
SBS	Chr6	18067073	T-A	Hetero	INTERGENIC
SBS	Chr6	28340644	C-G	Homo	INTERGENIC
SBS	Chr7	8349770	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g090850
SBS	Chr7	9311509	T-A	Hetero	INTERGENIC
SBS	Chr8	4810319	T-G	Homo	INTERGENIC
SBS	Chr8	26331306	A-G	Hetero	INTERGENIC
SBS	Chr9	7796051	C-T	Hetero	INTERGENIC
SBS	Chr9	13484492	C-G	Hetero	INTERGENIC
SBS	Chr9	18810991	G-T	Homo	UTR_3_PRIME
SBS	Chr9	21225104	C-T	Hetero	INTERGENIC
SBS	Chr10	17371895	C-A	Homo	INTERGENIC
SBS	Chr11	12197656	T-C	Hetero	INTERGENIC
SBS	Chr11	21128158	C-A	Hetero	INTERGENIC
SBS	Chr12	4358612	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	7447863	7447865	2
Deletion	Chr8	7873788	7873792	4
Deletion	Chr5	9685610	9685612	2
Deletion	Chr2	12398163	12398165	2
Deletion	Chr5	12529778	12530088	310
Deletion	Chr4	13171382	13171383	1
Deletion	Chr2	15720740	15720747	7
Deletion	Chr3	19737044	19737053	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	22434372	22547654	OsKitaake12g176901
Inversion	Chr12	22434383	22547655	OsKitaake12g176901

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes