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Mutant Information

Mutant Name	FN401-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN401-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18685004 A-T Hetero INTERGENIC
SBS Chr2 3652809 G-A Homo INTERGENIC
SBS Chr2 34816558 A-T Homo INTERGENIC
SBS Chr3 32470285 A-T Hetero INTERGENIC
SBS Chr4 18549495 A-G Hetero INTERGENIC
SBS Chr4 23744311 G-T Hetero UTR_3_PRIME
SBS Chr4 23744312 C-T Hetero UTR_3_PRIME
SBS Chr4 23744313 A-T Hetero UTR_3_PRIME
SBS Chr7 24478991 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g218020
SBS Chr7 25515106 C-T Hetero INTERGENIC
SBS Chr8 2526403 G-A Homo INTERGENIC
SBS Chr8 25043339 C-T Hetero INTERGENIC
SBS Chr8 27202823 T-C Homo INTRON
SBS Chr9 3438035 G-A Hetero INTERGENIC
SBS Chr10 5772637 T-A Hetero INTRON
SBS Chr11 12965584 G-C Hetero INTERGENIC
SBS Chr11 23293922 C-T Homo INTERGENIC
SBS Chr11 24317430 A-T Homo INTERGENIC
SBS Chr12 4329207 G-A Hetero INTERGENIC
SBS Chr12 9124980 G-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2576999 2577000 1
Deletion Chr11 3479001 3629000 149999 17
Deletion Chr4 3882001 3939000 56999 OsKitaake04g018900
Deletion Chr5 4651763 4651777 14
Deletion Chr5 4937699 4937704 5
Deletion Chr7 5125647 5125658 11
Deletion Chr2 7254787 7254792 5
Deletion Chr4 8970072 8970088 16
Deletion Chr12 11688132 11688297 165
Deletion Chr1 13430001 13442000 11999
Deletion Chr11 14512367 14512374 7
Deletion Chr2 15527001 15544000 16999 OsKitaake02g160900
Deletion Chr9 19684091 19684100 9
Deletion Chr6 20211199 20211200 1
Deletion Chr1 21954334 21954337 3
Deletion Chr11 23747980 23747984 4
Deletion Chr6 24833001 24858000 24999 3
Deletion Chr2 25057569 25057571 2
Deletion Chr4 28319857 28319867 10
Deletion Chr1 29427008 29427010 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6209644 6209647 2
Insertion Chr6 6770631 6770634 2
Insertion Chr6 19652532 19652539 6
Insertion Chr9 20801238 20801241 2
Insertion Chr10 18611633 18611640 6
Insertion Chr1 8263843 8263846 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 21336041 21346144

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18685004	A-T	Hetero	INTERGENIC
SBS	Chr2	3652809	G-A	Homo	INTERGENIC
SBS	Chr2	34816558	A-T	Homo	INTERGENIC
SBS	Chr3	32470285	A-T	Hetero	INTERGENIC
SBS	Chr4	18549495	A-G	Hetero	INTERGENIC
SBS	Chr4	23744311	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	23744312	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	23744313	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	24478991	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g218020
SBS	Chr7	25515106	C-T	Hetero	INTERGENIC
SBS	Chr8	2526403	G-A	Homo	INTERGENIC
SBS	Chr8	25043339	C-T	Hetero	INTERGENIC
SBS	Chr8	27202823	T-C	Homo	INTRON
SBS	Chr9	3438035	G-A	Hetero	INTERGENIC
SBS	Chr10	5772637	T-A	Hetero	INTRON
SBS	Chr11	12965584	G-C	Hetero	INTERGENIC
SBS	Chr11	23293922	C-T	Homo	INTERGENIC
SBS	Chr11	24317430	A-T	Homo	INTERGENIC
SBS	Chr12	4329207	G-A	Hetero	INTERGENIC
SBS	Chr12	9124980	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2576999	2577000	1
Deletion	Chr11	3479001	3629000	149999	17
Deletion	Chr4	3882001	3939000	56999	OsKitaake04g018900
Deletion	Chr5	4651763	4651777	14
Deletion	Chr5	4937699	4937704	5
Deletion	Chr7	5125647	5125658	11
Deletion	Chr2	7254787	7254792	5
Deletion	Chr4	8970072	8970088	16
Deletion	Chr12	11688132	11688297	165
Deletion	Chr1	13430001	13442000	11999
Deletion	Chr11	14512367	14512374	7
Deletion	Chr2	15527001	15544000	16999	OsKitaake02g160900
Deletion	Chr9	19684091	19684100	9
Deletion	Chr6	20211199	20211200	1
Deletion	Chr1	21954334	21954337	3
Deletion	Chr11	23747980	23747984	4
Deletion	Chr6	24833001	24858000	24999	3
Deletion	Chr2	25057569	25057571	2
Deletion	Chr4	28319857	28319867	10
Deletion	Chr1	29427008	29427010	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	21336041	21346144

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes