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Mutant Information

Mutant Name	FN4010-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4010-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 24

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1494526 C-T Hetero INTERGENIC
SBS Chr1 4030699 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 31457927 G-A Hetero INTERGENIC
SBS Chr1 32242362 T-C Hetero INTERGENIC
SBS Chr1 32388267 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 18493866 A-G Homo INTERGENIC
SBS Chr2 19291703 A-G Homo INTERGENIC
SBS Chr2 21332465 A-C Hetero INTERGENIC
SBS Chr2 25824579 G-A Hetero INTERGENIC
SBS Chr2 33339220 G-A Homo INTERGENIC
SBS Chr3 18554056 T-A Hetero INTERGENIC
SBS Chr4 570406 C-T Homo NON_SYNONYMOUS_CODING OsKitaake04g004200
SBS Chr4 32672560 G-T Hetero INTERGENIC
SBS Chr5 14162688 G-A Homo INTERGENIC
SBS Chr5 18036057 A-G Hetero INTERGENIC
SBS Chr6 20232300 C-T Homo INTERGENIC
SBS Chr7 3486222 A-T Homo INTERGENIC
SBS Chr8 12352852 T-A Hetero INTERGENIC
SBS Chr8 13792488 G-T Hetero INTERGENIC
SBS Chr9 22633021 C-T Hetero INTERGENIC
SBS Chr10 9868409 C-T Homo INTERGENIC
SBS Chr11 3424808 T-C Hetero INTERGENIC
SBS Chr11 13877617 C-T Hetero INTERGENIC
SBS Chr11 27133533 G-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 902286 902287 1
Deletion Chr11 4623494 4623496 2
Deletion Chr2 7640730 7640734 4
Deletion Chr10 8112372 8112373 1
Deletion Chr2 9825298 9825299 1
Deletion Chr1 9934001 10173000 238999 24
Deletion Chr6 15012142 15012148 6
Deletion Chr2 18833157 18833164 7
Deletion Chr10 19505120 19505122 2
Deletion Chr3 22853574 22853589 15
Deletion Chr10 23528809 23528812 3
Deletion Chr6 27759526 27759539 13

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 3714656 3714659 2
Insertion Chr5 21888885 21888888 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 26623023 27009704
Inversion Chr2 26623030 27009717

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1494526	C-T	Hetero	INTERGENIC
SBS	Chr1	4030699	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	31457927	G-A	Hetero	INTERGENIC
SBS	Chr1	32242362	T-C	Hetero	INTERGENIC
SBS	Chr1	32388267	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	18493866	A-G	Homo	INTERGENIC
SBS	Chr2	19291703	A-G	Homo	INTERGENIC
SBS	Chr2	21332465	A-C	Hetero	INTERGENIC
SBS	Chr2	25824579	G-A	Hetero	INTERGENIC
SBS	Chr2	33339220	G-A	Homo	INTERGENIC
SBS	Chr3	18554056	T-A	Hetero	INTERGENIC
SBS	Chr4	570406	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g004200
SBS	Chr4	32672560	G-T	Hetero	INTERGENIC
SBS	Chr5	14162688	G-A	Homo	INTERGENIC
SBS	Chr5	18036057	A-G	Hetero	INTERGENIC
SBS	Chr6	20232300	C-T	Homo	INTERGENIC
SBS	Chr7	3486222	A-T	Homo	INTERGENIC
SBS	Chr8	12352852	T-A	Hetero	INTERGENIC
SBS	Chr8	13792488	G-T	Hetero	INTERGENIC
SBS	Chr9	22633021	C-T	Hetero	INTERGENIC
SBS	Chr10	9868409	C-T	Homo	INTERGENIC
SBS	Chr11	3424808	T-C	Hetero	INTERGENIC
SBS	Chr11	13877617	C-T	Hetero	INTERGENIC
SBS	Chr11	27133533	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	902286	902287	1
Deletion	Chr11	4623494	4623496	2
Deletion	Chr2	7640730	7640734	4
Deletion	Chr10	8112372	8112373	1
Deletion	Chr2	9825298	9825299	1
Deletion	Chr1	9934001	10173000	238999	24
Deletion	Chr6	15012142	15012148	6
Deletion	Chr2	18833157	18833164	7
Deletion	Chr10	19505120	19505122	2
Deletion	Chr3	22853574	22853589	15
Deletion	Chr10	23528809	23528812	3
Deletion	Chr6	27759526	27759539	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	26623023	27009704
Inversion	Chr2	26623030	27009717

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes