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| Mutant Information |
|---|
| Mutant Name | FN4011-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4011-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 40
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 3871127 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 36988797 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 38868668 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g416800 |
| SBS | Chr1 | 40341219 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 40807960 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 9810602 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 23508915 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 34113183 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 3932222 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 5197390 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 24085501 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 30200629 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 1251717 | T-C | Hetero | INTRON | |
| SBS | Chr4 | 2654799 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 11188165 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 20923563 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 22162243 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 3179876 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 6835233 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 19330835 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 22812622 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 24567165 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g217700 |
| SBS | Chr6 | 28539290 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 941606 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 941607 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20166847 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7101867 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 24431047 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 24692980 | A-T | Hetero | INTRON | |
| SBS | Chr8 | 24698159 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 28266815 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 11816128 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 15265234 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 19379476 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 8203993 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 12429301 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 24891527 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 5425862 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 19861387 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 26758715 | C-T | Hetero | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 4597928 | 4597929 | 1 | |
| Deletion | Chr1 | 6160152 | 6160162 | 10 | |
| Deletion | Chr11 | 6248767 | 6248768 | 1 | |
| Deletion | Chr2 | 8228462 | 8228463 | 1 | |
| Deletion | Chr3 | 8686682 | 8686685 | 3 | OsKitaake03g118900 |
| Deletion | Chr11 | 10059789 | 10059792 | 3 | |
| Deletion | Chr9 | 14532782 | 14532784 | 2 | |
| Deletion | Chr8 | 18620160 | 18620163 | 3 | |
| Deletion | Chr10 | 18687201 | 18687203 | 2 | |
| Deletion | Chr12 | 19438030 | 19438035 | 5 | |
| Deletion | Chr12 | 24050937 | 24050947 | 10 | |
| Deletion | Chr3 | 24085524 | 24085530 | 6 | |
| Deletion | Chr12 | 26723647 | 26723648 | 1 | |
| Deletion | Chr2 | 28081961 | 28081970 | 9 | |
| Deletion | Chr5 | 28146310 | 28146326 | 16 | |
| Deletion | Chr1 | 28331546 | 28331549 | 3 | |
| Deletion | Chr2 | 32207001 | 32236000 | 28999 | 4 |
| Deletion | Chr3 | 33021375 | 33021392 | 17 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 9765307 | 9765311 | 3 | |
| Insertion | Chr7 | 1254156 | 1254159 | 2 |
Inversions: 11
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 4192874 | 4613941 | OsKitaake03g066700 |
| Inversion | Chr3 | 4192880 | 4614659 | OsKitaake03g066700 |
| Inversion | Chr12 | 5752658 | 5770961 | OsKitaake12g069800 |
| Inversion | Chr7 | 7182672 | 7929760 | |
| Inversion | Chr7 | 7182674 | 7929767 | |
| Inversion | Chr4 | 10566106 | 10570569 | |
| Inversion | Chr4 | 10566126 | 10570571 | |
| Inversion | Chr4 | 26871245 | 27203138 | |
| Inversion | Chr4 | 26871251 | 27203136 | |
| Inversion | Chr5 | 27878533 | 28132118 | OsKitaake05g256100 |
| Inversion | Chr5 | 28132109 | 28327053 | OsKitaake05g263100 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 4614749 | Chr5 | 27878521 | 2 |
| Translocation | Chr8 | 4614755 | Chr5 | 28050466 | OsKitaake08g052000 |
| Translocation | Chr12 | 5770962 | Chr8 | 2020443 |