Search Kitaake

Mutant Information

Mutant Name	FN4016-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4016-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23992992 T-G Homo INTERGENIC
SBS Chr1 23992993 G-T Homo INTERGENIC
SBS Chr1 36783281 A-T Homo INTERGENIC
SBS Chr1 37592886 A-G Homo INTERGENIC
SBS Chr2 967342 A-T Hetero INTERGENIC
SBS Chr2 1116503 T-G Hetero INTRON
SBS Chr2 36799731 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g393200
SBS Chr3 16158759 C-T Homo INTERGENIC
SBS Chr4 14174874 T-C Homo INTRON
SBS Chr4 24342880 T-C Hetero INTERGENIC
SBS Chr5 25950659 C-A Homo INTERGENIC
SBS Chr6 3308514 T-C Hetero INTERGENIC
SBS Chr7 18733971 A-T Hetero INTRON
SBS Chr9 8327693 C-A Hetero INTERGENIC
SBS Chr9 9796322 A-T Hetero INTERGENIC
SBS Chr9 12635716 C-T Hetero INTERGENIC
SBS Chr9 15289285 C-T Hetero INTERGENIC
SBS Chr10 2040201 G-A Hetero INTERGENIC
SBS Chr10 18720951 G-A Homo INTERGENIC
SBS Chr10 19569631 C-G Homo SPLICE_SITE_ACCEPTOR OsKitaake10g144000
SBS Chr11 7161687 C-G Homo INTERGENIC
SBS Chr11 7579893 G-A Homo INTRON
SBS Chr11 7843544 G-A Homo START_GAINED

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 809653 809655 2
Deletion Chr5 4597692 4597701 9
Deletion Chr10 5512003 5512009 6
Deletion Chr11 7539710 7539721 11
Deletion Chr1 8396722 8396725 3
Deletion Chr1 10009886 10009901 15
Deletion Chr8 11393578 11393605 27
Deletion Chr3 13245032 13245037 5
Deletion Chr10 14125135 14125138 3
Deletion Chr6 14346577 14346584 7
Deletion Chr11 14708427 14708430 3
Deletion Chr11 15415405 15415415 10
Deletion Chr2 15756829 15756830 1
Deletion Chr1 15782329 15782342 13
Deletion Chr9 16843242 16843244 2
Deletion Chr7 18056750 18056760 10
Deletion Chr6 19474967 19474973 6
Deletion Chr7 20826404 20826413 9
Deletion Chr10 23357137 23357153 16
Deletion Chr2 23880739 23880743 4
Deletion Chr4 31384001 31407000 22999 2
Deletion Chr2 31610377 31610388 11
Deletion Chr2 34610277 34610285 8

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 17517795 17517799 3
Insertion Chr7 20394532 20394535 2
Insertion Chr8 24269047 24269050 2
Insertion Chr9 7686757 7686760 2
Insertion Chr10 17381581 17381584 2
Insertion Chr11 13921880 13921882 1
Insertion Chr6 11200865 11200886 20

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 28009941 28373118
Inversion Chr6 28009942 28373120

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 16528706 Chr4 36796901 OsKitaake04g320900
Translocation Chr9 16529191 Chr4 36796900 OsKitaake04g320900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23992992	T-G	Homo	INTERGENIC
SBS	Chr1	23992993	G-T	Homo	INTERGENIC
SBS	Chr1	36783281	A-T	Homo	INTERGENIC
SBS	Chr1	37592886	A-G	Homo	INTERGENIC
SBS	Chr2	967342	A-T	Hetero	INTERGENIC
SBS	Chr2	1116503	T-G	Hetero	INTRON
SBS	Chr2	36799731	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g393200
SBS	Chr3	16158759	C-T	Homo	INTERGENIC
SBS	Chr4	14174874	T-C	Homo	INTRON
SBS	Chr4	24342880	T-C	Hetero	INTERGENIC
SBS	Chr5	25950659	C-A	Homo	INTERGENIC
SBS	Chr6	3308514	T-C	Hetero	INTERGENIC
SBS	Chr7	18733971	A-T	Hetero	INTRON
SBS	Chr9	8327693	C-A	Hetero	INTERGENIC
SBS	Chr9	9796322	A-T	Hetero	INTERGENIC
SBS	Chr9	12635716	C-T	Hetero	INTERGENIC
SBS	Chr9	15289285	C-T	Hetero	INTERGENIC
SBS	Chr10	2040201	G-A	Hetero	INTERGENIC
SBS	Chr10	18720951	G-A	Homo	INTERGENIC
SBS	Chr10	19569631	C-G	Homo	SPLICE_SITE_ACCEPTOR	OsKitaake10g144000
SBS	Chr11	7161687	C-G	Homo	INTERGENIC
SBS	Chr11	7579893	G-A	Homo	INTRON
SBS	Chr11	7843544	G-A	Homo	START_GAINED

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	809653	809655	2
Deletion	Chr5	4597692	4597701	9
Deletion	Chr10	5512003	5512009	6
Deletion	Chr11	7539710	7539721	11
Deletion	Chr1	8396722	8396725	3
Deletion	Chr1	10009886	10009901	15
Deletion	Chr8	11393578	11393605	27
Deletion	Chr3	13245032	13245037	5
Deletion	Chr10	14125135	14125138	3
Deletion	Chr6	14346577	14346584	7
Deletion	Chr11	14708427	14708430	3
Deletion	Chr11	15415405	15415415	10
Deletion	Chr2	15756829	15756830	1
Deletion	Chr1	15782329	15782342	13
Deletion	Chr9	16843242	16843244	2
Deletion	Chr7	18056750	18056760	10
Deletion	Chr6	19474967	19474973	6
Deletion	Chr7	20826404	20826413	9
Deletion	Chr10	23357137	23357153	16
Deletion	Chr2	23880739	23880743	4
Deletion	Chr4	31384001	31407000	22999	2
Deletion	Chr2	31610377	31610388	11
Deletion	Chr2	34610277	34610285	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	28009941	28373118
Inversion	Chr6	28009942	28373120

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes