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| Mutant Information |
|---|
| Mutant Name | FN4017-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4017-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1434964 | C-A | Homo | INTERGENIC | |
| SBS | Chr1 | 27736813 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29775240 | G-A | Hetero | INTRON | |
| SBS | Chr1 | 30982722 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 35500823 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 11540464 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 17015476 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 21292069 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 27145224 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 36602719 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 16546623 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 19706164 | A-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 33644885 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16461048 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16461051 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16506925 | C-G | Hetero | INTRON | |
| SBS | Chr6 | 2663243 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23216825 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 4973697 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 21368870 | A-G | Hetero | INTRON | |
| SBS | Chr10 | 7474584 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 7206153 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 17481388 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g136800 |
| SBS | Chr11 | 21320834 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1981510 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 6114649 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 7712980 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 20098453 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 25464242 | G-A | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 2941232 | 2941234 | 2 | |
| Deletion | Chr5 | 7299802 | 7299805 | 3 | |
| Deletion | Chr9 | 8779925 | 8780016 | 91 | |
| Deletion | Chr1 | 12914768 | 12914787 | 19 | |
| Deletion | Chr1 | 15466028 | 15466030 | 2 | |
| Deletion | Chr3 | 17350689 | 17350690 | 1 | |
| Deletion | Chr4 | 22847465 | 22847466 | 1 | OsKitaake04g137600 |
| Deletion | Chr11 | 24397001 | 24469000 | 71999 | 6 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr10 | 14863209 | 14863211 | 1 |
Inversions: 8
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 1597015 | 1999739 | OsKitaake12g031300 |
| Inversion | Chr11 | 24393458 | 24499718 | |
| Inversion | Chr11 | 24468511 | 24499726 | |
| Inversion | Chr3 | 29776895 | 29966332 | OsKitaake03g311350 |
| Inversion | Chr3 | 37614473 | 37694048 | OsKitaake03g422400 |
| Inversion | Chr3 | 37614474 | 37694164 | OsKitaake03g422400 |
| Inversion | Chr1 | 43933866 | 44023855 | 2 |
| Inversion | Chr1 | 43933883 | 44023862 | 2 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 1999731 | Chr9 | 13740906 | 2 |
| Translocation | Chr12 | 2415194 | Chr9 | 13740913 | OsKitaake09g092700 |
| Translocation | Chr7 | 3387043 | Chr1 | 36239665 | 2 |
| Translocation | Chr7 | 3387047 | Chr1 | 36240691 | 2 |