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| Mutant Information |
|---|
| Mutant Name | FN402-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN402-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 12439230 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 22736862 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 5177690 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 14062354 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 13659546 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 35271392 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 18113092 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 18784931 | A-C | Homo | INTERGENIC | |
| SBS | Chr4 | 21626127 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 21626130 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23309784 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 26348440 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 32018254 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 34770357 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 8010890 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 19816756 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 8234327 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 9585936 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 12081436 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 16035872 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 5842804 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 22513510 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 23599007 | G-A | Hetero | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 4651650 | 4651657 | 7 | |
| Deletion | Chr6 | 6751235 | 6751240 | 5 | |
| Deletion | Chr9 | 9309697 | 9309698 | 1 | |
| Deletion | Chr1 | 10778251 | 10778252 | 1 | |
| Deletion | Chr10 | 11727396 | 11727405 | 9 | |
| Deletion | Chr8 | 14500174 | 14500175 | 1 | |
| Deletion | Chr4 | 15380821 | 15380824 | 3 | |
| Deletion | Chr2 | 16250427 | 16250428 | 1 | |
| Deletion | Chr12 | 20314670 | 20314671 | 1 | |
| Deletion | Chr5 | 20327670 | 20327673 | 3 | |
| Deletion | Chr3 | 21284596 | 21284607 | 11 | |
| Deletion | Chr6 | 24896014 | 24896017 | 3 | OsKitaake06g221400 |
| Deletion | Chr5 | 26032181 | 26032182 | 1 | |
| Deletion | Chr7 | 28098643 | 28098644 | 1 | |
| Deletion | Chr1 | 32057384 | 32057386 | 2 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 44159912 | 44159919 | 6 | OsKitaake01g493050  |
| Insertion | Chr2 | 18332282 | 18332286 | 3 | |
| Insertion | Chr6 | 3740181 | 3740184 | 2 | |
| Insertion | Chr6 | 7853292 | 7853295 | 2 | |
| Insertion | Chr9 | 15432927 | 15432930 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 5562475 | 5659245 | |
| Inversion | Chr7 | 5562481 | 5659283 |