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| Mutant Information |
|---|
| Mutant Name | FN4020-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4020-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 21378065 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 38970789 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 10987275 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 13318885 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g147700 |
| SBS | Chr2 | 35967490 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 9098850 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 10203565 | T-C | Homo | INTRON | |
| SBS | Chr3 | 22655448 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 28928219 | T-A | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 30369852 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 31735876 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g334600 |
| SBS | Chr3 | 32621344 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 13025000 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 25016880 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 29756219 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 29638595 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 933540 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 14346741 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 20411745 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g182400 |
| SBS | Chr7 | 4458942 | T-C | Hetero | INTRON | |
| SBS | Chr7 | 7756952 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 10977230 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 12868375 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 21503787 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 23345165 | T-G | Homo | INTERGENIC | |
| SBS | Chr9 | 3532173 | T-G | Hetero | INTRON | |
| SBS | Chr9 | 4177821 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4757768 | G-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 18176517 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 817137 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 20551684 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 5945272 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13102605 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 784091 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 5662317 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr12 | 9138429 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 15238112 | T-C | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 407476 | 407484 | 8 | |
| Deletion | Chr12 | 1035077 | 1035087 | 10 | |
| Deletion | Chr6 | 1403230 | 1403237 | 7 | |
| Deletion | Chr1 | 2644200 | 2644207 | 7 | |
| Deletion | Chr8 | 4396401 | 4396403 | 2 | |
| Deletion | Chr4 | 11791266 | 11791282 | 16 | |
| Deletion | Chr2 | 11890001 | 11938000 | 47999 | OsKitaake02g135600 |
| Deletion | Chr9 | 12756164 | 12756183 | 19 | |
| Deletion | Chr11 | 17631607 | 17631608 | 1 | |
| Deletion | Chr4 | 18961106 | 18961112 | 6 | |
| Deletion | Chr2 | 23947363 | 23947370 | 7 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 10666261 | 10666264 | 2 | |
| Insertion | Chr6 | 26744194 | 26744197 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 20193232 | Chr3 | 10028924 |