Search Kitaake

Mutant Information

Mutant Name	FN4021-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4021-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8502314 T-A Hetero INTERGENIC
SBS Chr1 19307987 C-T Homo INTERGENIC
SBS Chr1 36583865 G-A Homo INTERGENIC
SBS Chr1 37875281 C-T Homo INTRON
SBS Chr2 7825507 C-A Homo INTERGENIC
SBS Chr2 16337524 C-T Homo INTERGENIC
SBS Chr3 26073546 G-A Homo INTERGENIC
SBS Chr3 26870358 G-C Hetero INTERGENIC
SBS Chr4 9007162 G-A Hetero INTERGENIC
SBS Chr4 29898049 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g229800
SBS Chr4 35890293 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g307700
SBS Chr5 12714076 C-T Hetero INTERGENIC
SBS Chr5 17034874 G-A Hetero INTERGENIC
SBS Chr7 18719259 G-A Homo INTERGENIC
SBS Chr7 21057336 C-T Homo INTERGENIC
SBS Chr8 815429 G-A Hetero INTERGENIC
SBS Chr8 1744058 C-A Hetero INTERGENIC
SBS Chr8 22394609 A-G Hetero INTERGENIC
SBS Chr9 3754032 A-T Hetero INTERGENIC
SBS Chr9 18446090 C-T Homo INTERGENIC
SBS Chr10 13521655 C-A Hetero INTERGENIC
SBS Chr10 13595352 C-T Hetero INTERGENIC
SBS Chr11 17870084 C-T Hetero INTRON

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 3192005 3192018 13
Deletion Chr6 8200001 8248000 47999 5
Deletion Chr4 10507868 10507870 2
Deletion Chr1 11444041 11444044 3
Deletion Chr12 12970502 12970504 2
Deletion Chr9 16095275 16095281 6 OsKitaake09g115400
Deletion Chr4 16666307 16666317 10
Deletion Chr4 16703689 16703690 1
Deletion Chr6 17664719 17664723 4
Deletion Chr5 18162308 18162311 3
Deletion Chr4 19818423 19818424 1
Deletion Chr3 24366328 24366332 4
Deletion Chr7 25554248 25554249 1 OsKitaake07g232100
Deletion Chr4 31869135 31869150 15

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 32955158 32955165 6
Insertion Chr6 13448796 13448799 2
Insertion Chr7 4362233 4362236 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8502314	T-A	Hetero	INTERGENIC
SBS	Chr1	19307987	C-T	Homo	INTERGENIC
SBS	Chr1	36583865	G-A	Homo	INTERGENIC
SBS	Chr1	37875281	C-T	Homo	INTRON
SBS	Chr2	7825507	C-A	Homo	INTERGENIC
SBS	Chr2	16337524	C-T	Homo	INTERGENIC
SBS	Chr3	26073546	G-A	Homo	INTERGENIC
SBS	Chr3	26870358	G-C	Hetero	INTERGENIC
SBS	Chr4	9007162	G-A	Hetero	INTERGENIC
SBS	Chr4	29898049	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g229800
SBS	Chr4	35890293	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g307700
SBS	Chr5	12714076	C-T	Hetero	INTERGENIC
SBS	Chr5	17034874	G-A	Hetero	INTERGENIC
SBS	Chr7	18719259	G-A	Homo	INTERGENIC
SBS	Chr7	21057336	C-T	Homo	INTERGENIC
SBS	Chr8	815429	G-A	Hetero	INTERGENIC
SBS	Chr8	1744058	C-A	Hetero	INTERGENIC
SBS	Chr8	22394609	A-G	Hetero	INTERGENIC
SBS	Chr9	3754032	A-T	Hetero	INTERGENIC
SBS	Chr9	18446090	C-T	Homo	INTERGENIC
SBS	Chr10	13521655	C-A	Hetero	INTERGENIC
SBS	Chr10	13595352	C-T	Hetero	INTERGENIC
SBS	Chr11	17870084	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	3192005	3192018	13
Deletion	Chr6	8200001	8248000	47999	5
Deletion	Chr4	10507868	10507870	2
Deletion	Chr1	11444041	11444044	3
Deletion	Chr12	12970502	12970504	2
Deletion	Chr9	16095275	16095281	6	OsKitaake09g115400
Deletion	Chr4	16666307	16666317	10
Deletion	Chr4	16703689	16703690	1
Deletion	Chr6	17664719	17664723	4
Deletion	Chr5	18162308	18162311	3
Deletion	Chr4	19818423	19818424	1
Deletion	Chr3	24366328	24366332	4
Deletion	Chr7	25554248	25554249	1	OsKitaake07g232100
Deletion	Chr4	31869135	31869150	15

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes