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| Mutant Information |
|---|
| Mutant Name | FN4022-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4022-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9350206 | A-G | Hetero | INTRON | |
| SBS | Chr1 | 24106843 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 39978215 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 1565567 | A-T | Homo | INTRON | |
| SBS | Chr2 | 7994195 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 35505042 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 8038070 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 13076931 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16047474 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 20213489 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 22883849 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 23059310 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 34186493 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 11470859 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 20797431 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 29201118 | C-A | Hetero | INTRON | |
| SBS | Chr6 | 407882 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g002900 |
| SBS | Chr6 | 3111236 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 9679116 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15117379 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 23079316 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 11562035 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 11900636 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 12221286 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 5342986 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 8420465 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 14440424 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 20396642 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 8966386 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 15955216 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16131183 | A-C | Homo | INTERGENIC | |
| SBS | Chr11 | 28746082 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 12025077 | C-T | Hetero | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 725083 | 725085 | 2 | |
| Deletion | Chr6 | 4059250 | 4059253 | 3 | |
| Deletion | Chr4 | 4345576 | 4345581 | 5 | |
| Deletion | Chr8 | 9680822 | 9680824 | 2 | |
| Deletion | Chr4 | 10398281 | 10398282 | 1 | |
| Deletion | Chr3 | 19868722 | 19868731 | 9 | |
| Deletion | Chr11 | 20511759 | 20511779 | 20 | |
| Deletion | Chr11 | 21429195 | 21429198 | 3 | OsKitaake11g169500 |
| Deletion | Chr5 | 21435181 | 21435185 | 4 | |
| Deletion | Chr10 | 22407519 | 22407520 | 1 | OsKitaake10g184100 |
| Deletion | Chr4 | 22524425 | 22524432 | 7 | OsKitaake04g133100 |
| Deletion | Chr1 | 22721018 | 22721020 | 2 | |
| Deletion | Chr3 | 35991939 | 35991961 | 22 | OsKitaake03g397200 |
| Deletion | Chr3 | 37451593 | 37451596 | 3 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 711181 | 711184 | 2 | |
| Insertion | Chr2 | 1154908 | 1154912 | 3 | |
| Insertion | Chr4 | 31660960 | 31660968 | 7 | |
| Insertion | Chr7 | 26906589 | 26906592 | 2 | |
| Insertion | Chr12 | 4664310 | 4664320 | 9 | OsKitaake12g061600  |
| Insertion | Chr8 | 7323137 | 7323139 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 7608070 | 7805359 | OsKitaake10g049000 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 7608066 | Chr7 | 11512399 | 2 |
| Translocation | Chr10 | 7805338 | Chr6 | 6329510 | |
| Translocation | Chr7 | 11501613 | Chr6 | 6328593 | OsKitaake07g107100 |