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| Mutant Information |
|---|
| Mutant Name | FN4023-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4023-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 24
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14282698 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 22047556 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 5701475 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 21858980 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 33444608 | T-C | Homo | INTERGENIC | |
| SBS | Chr4 | 6836 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 9799495 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 19450617 | C-A | Hetero | UTR_5_PRIME | |
| SBS | Chr6 | 10237676 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 18744274 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 18377833 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr7 | 26490805 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 2023628 | T-C | Hetero | INTRON | |
| SBS | Chr10 | 1152704 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 18675149 | A-G | Homo | INTERGENIC | |
| SBS | Chr10 | 20040705 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 5358589 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 26998061 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 3775194 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 3775196 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 5770793 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 18849024 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 20728771 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr12 | 26911855 | C-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 710001 | 726000 | 15999 | OsKitaake07g008550 |
| Deletion | Chr9 | 2036001 | 2081000 | 44999 | 2 |
| Deletion | Chr3 | 9324898 | 9324909 | 11 | |
| Deletion | Chr6 | 10832001 | 10863000 | 30999 | OsKitaake06g121250 |
| Deletion | Chr6 | 10882001 | 11031000 | 148999 | 11 |
| Deletion | Chr8 | 24374293 | 24374297 | 4 | |
| Deletion | Chr4 | 24856465 | 24856472 | 7 | OsKitaake04g164500 |
| Deletion | Chr8 | 28807853 | 28807855 | 2 | |
| Deletion | Chr5 | 30165667 | 30165668 | 1 | |
| Deletion | Chr2 | 35332312 | 35332322 | 10 | |
| Deletion | Chr1 | 41943001 | 42191000 | 247999 | 50 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 40046144 | 40046147 | 2 | |
| Insertion | Chr8 | 28455656 | 28455659 | 2 | |
| Insertion | Chr12 | 19542545 | 19542548 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 12100756 | 12147981 | |
| Inversion | Chr6 | 12100760 | 12147999 | |
| Inversion | Chr11 | 19492990 | 20253618 | |
| Inversion | Chr11 | 19493000 | 20253618 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 26875793 | Chr3 | 6284522 | |
| Translocation | Chr6 | 26900736 | Chr3 | 6284506 | OsKitaake06g240800 |