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Mutant Information

Mutant Name	FN4024-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4024-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 10280343 T-A Homo INTERGENIC
SBS Chr2 31729230 T-G Homo INTERGENIC
SBS Chr3 1928613 C-A Homo NON_SYNONYMOUS_CODING OsKitaake03g027600
SBS Chr3 9901352 T-A Hetero INTERGENIC
SBS Chr3 9901353 T-A Hetero INTERGENIC
SBS Chr3 12884506 T-A Hetero INTERGENIC
SBS Chr4 20051419 C-T Homo INTRON
SBS Chr5 20421967 T-A Homo INTERGENIC
SBS Chr6 6054920 G-C Homo INTERGENIC
SBS Chr6 8841048 G-A Hetero INTERGENIC
SBS Chr7 17052405 A-T Homo INTERGENIC
SBS Chr7 23707151 T-C Homo INTERGENIC
SBS Chr10 16455643 G-T Hetero INTERGENIC
SBS Chr10 22651275 G-A Hetero INTERGENIC
SBS Chr11 14009983 G-A Hetero INTERGENIC
SBS Chr11 26668268 C-A Homo INTERGENIC
SBS Chr11 26668269 G-A Homo INTERGENIC
SBS Chr12 9367190 C-T Homo INTERGENIC
SBS Chr12 21052174 A-T Hetero INTERGENIC
SBS Chr12 21638052 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g169500

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1758885 1758889 4
Deletion Chr1 3701070 3701091 21
Deletion Chr12 10287372 10287374 2
Deletion Chr3 10965009 10965011 2
Deletion Chr11 11024024 11024037 13
Deletion Chr8 11055382 11055390 8
Deletion Chr1 11790306 11790317 11
Deletion Chr9 17591399 17591408 9
Deletion Chr3 17993308 17993309 1
Deletion Chr2 18604186 18604189 3
Deletion Chr5 19745288 19745609 321 OsKitaake05g156600
Deletion Chr7 23045453 23045460 7
Deletion Chr12 25187183 25187186 3
Deletion Chr7 27312573 27312583 10
Deletion Chr1 39225885 39225889 4 OsKitaake01g421500

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 10879950 11504479 OsKitaake07g107100
Inversion Chr7 10879956 11504479 OsKitaake07g107100
Inversion Chr10 16551909 16595177 OsKitaake10g113300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	10280343	T-A	Homo	INTERGENIC
SBS	Chr2	31729230	T-G	Homo	INTERGENIC
SBS	Chr3	1928613	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g027600
SBS	Chr3	9901352	T-A	Hetero	INTERGENIC
SBS	Chr3	9901353	T-A	Hetero	INTERGENIC
SBS	Chr3	12884506	T-A	Hetero	INTERGENIC
SBS	Chr4	20051419	C-T	Homo	INTRON
SBS	Chr5	20421967	T-A	Homo	INTERGENIC
SBS	Chr6	6054920	G-C	Homo	INTERGENIC
SBS	Chr6	8841048	G-A	Hetero	INTERGENIC
SBS	Chr7	17052405	A-T	Homo	INTERGENIC
SBS	Chr7	23707151	T-C	Homo	INTERGENIC
SBS	Chr10	16455643	G-T	Hetero	INTERGENIC
SBS	Chr10	22651275	G-A	Hetero	INTERGENIC
SBS	Chr11	14009983	G-A	Hetero	INTERGENIC
SBS	Chr11	26668268	C-A	Homo	INTERGENIC
SBS	Chr11	26668269	G-A	Homo	INTERGENIC
SBS	Chr12	9367190	C-T	Homo	INTERGENIC
SBS	Chr12	21052174	A-T	Hetero	INTERGENIC
SBS	Chr12	21638052	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g169500

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1758885	1758889	4
Deletion	Chr1	3701070	3701091	21
Deletion	Chr12	10287372	10287374	2
Deletion	Chr3	10965009	10965011	2
Deletion	Chr11	11024024	11024037	13
Deletion	Chr8	11055382	11055390	8
Deletion	Chr1	11790306	11790317	11
Deletion	Chr9	17591399	17591408	9
Deletion	Chr3	17993308	17993309	1
Deletion	Chr2	18604186	18604189	3
Deletion	Chr5	19745288	19745609	321	OsKitaake05g156600
Deletion	Chr7	23045453	23045460	7
Deletion	Chr12	25187183	25187186	3
Deletion	Chr7	27312573	27312583	10
Deletion	Chr1	39225885	39225889	4	OsKitaake01g421500

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	10879950	11504479	OsKitaake07g107100
Inversion	Chr7	10879956	11504479	OsKitaake07g107100
Inversion	Chr10	16551909	16595177	OsKitaake10g113300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes