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| Mutant Information |
|---|
| Mutant Name | FN4025-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4025-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 27254292 | G-C | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 17822901 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 318213 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 2828436 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 17961951 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g219650 |
| SBS | Chr3 | 19611274 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29624901 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 34549264 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr3 | 34549265 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 5459026 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 7533872 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14619613 | A-G | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 16911916 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 20232888 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 4548296 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g056700 |
| SBS | Chr7 | 16542740 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 28260342 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 1009660 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 6586007 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 13579948 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 2777731 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 9398914 | G-T | Homo | INTERGENIC | |
| SBS | Chr11 | 916701 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 916702 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 2691218 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g038200 |
| SBS | Chr11 | 19692362 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 19692363 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14772919 | G-A | Hetero | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 2649915 | 2649918 | 3 | |
| Deletion | Chr8 | 8994080 | 8994085 | 5 | |
| Deletion | Chr2 | 10069001 | 10085000 | 15999 | 3 |
| Deletion | Chr1 | 10472272 | 10472275 | 3 | |
| Deletion | Chr5 | 15424171 | 15424173 | 2 | OsKitaake05g118300 |
| Deletion | Chr11 | 17818572 | 17818587 | 15 | |
| Deletion | Chr1 | 33377674 | 33377681 | 7 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 29224657 | 29224662 | 4 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 10233254 | 10446605 | 2 |
| Inversion | Chr2 | 10233279 | 10446609 | 2 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 18933206 | Chr3 | 34268349 | OsKitaake03g370900 |
| Translocation | Chr10 | 18933743 | Chr3 | 34268347 | OsKitaake03g370900 |