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Mutant Information

Mutant Name	FN4030-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4030-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5330741 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 7641874 G-A Hetero INTERGENIC
SBS Chr1 30777357 T-A Hetero INTERGENIC
SBS Chr1 32034878 G-A Hetero INTERGENIC
SBS Chr2 23270741 T-C Homo INTRON
SBS Chr3 3762842 C-T Homo UTR_3_PRIME
SBS Chr3 6037129 G-T Homo INTERGENIC
SBS Chr4 5694563 G-A Homo INTERGENIC
SBS Chr5 2088502 C-T Hetero INTERGENIC
SBS Chr5 6505478 A-T Hetero INTERGENIC
SBS Chr5 6505479 A-T Hetero INTERGENIC
SBS Chr5 8902522 A-T Homo INTERGENIC
SBS Chr5 29346484 A-G Hetero INTERGENIC
SBS Chr5 29346540 T-A Hetero INTERGENIC
SBS Chr6 9863406 G-A Hetero INTERGENIC
SBS Chr6 29549998 T-A Homo INTERGENIC
SBS Chr7 4076433 T-C Hetero INTERGENIC
SBS Chr7 8424987 T-G Hetero INTRON
SBS Chr8 4154595 A-G Hetero INTERGENIC
SBS Chr8 17858141 C-T Hetero INTERGENIC
SBS Chr8 21670964 C-T Hetero INTERGENIC
SBS Chr9 12098753 G-T Hetero INTRON
SBS Chr10 7876671 G-T Homo INTERGENIC
SBS Chr10 18052912 T-A Hetero INTERGENIC
SBS Chr11 14785415 T-A Hetero INTERGENIC
SBS Chr11 14879398 C-T Homo INTERGENIC
SBS Chr11 23875169 A-G Hetero INTERGENIC
SBS Chr12 1099082 A-T Hetero INTERGENIC
SBS Chr12 6288334 C-T Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 156979 156981 2
Deletion Chr3 624737 624739 2
Deletion Chr8 627005 627014 9
Deletion Chr1 2858677 2858679 2
Deletion Chr11 6167510 6167511 1
Deletion Chr2 6475564 6475570 6
Deletion Chr11 8328169 8328176 7
Deletion Chr8 9570877 9570878 1
Deletion Chr6 13723383 13723385 2
Deletion Chr2 13826557 13826875 318
Deletion Chr11 14515056 14515071 15
Deletion Chr8 16201434 16201435 1
Deletion Chr12 18621365 18621376 11
Deletion Chr12 19965714 19965716 2
Deletion Chr12 20526154 20526160 6
Deletion Chr7 23295429 23295438 9
Deletion Chr5 26139924 26139925 1
Deletion Chr8 26144135 26144147 12
Deletion Chr1 36092862 36092864 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 15689191 15689194 2
Insertion Chr9 10285867 10285872 4
Insertion Chr12 17238951 17238954 2
Insertion Chr5 30236466 30236474 7

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5330741	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	7641874	G-A	Hetero	INTERGENIC
SBS	Chr1	30777357	T-A	Hetero	INTERGENIC
SBS	Chr1	32034878	G-A	Hetero	INTERGENIC
SBS	Chr2	23270741	T-C	Homo	INTRON
SBS	Chr3	3762842	C-T	Homo	UTR_3_PRIME
SBS	Chr3	6037129	G-T	Homo	INTERGENIC
SBS	Chr4	5694563	G-A	Homo	INTERGENIC
SBS	Chr5	2088502	C-T	Hetero	INTERGENIC
SBS	Chr5	6505478	A-T	Hetero	INTERGENIC
SBS	Chr5	6505479	A-T	Hetero	INTERGENIC
SBS	Chr5	8902522	A-T	Homo	INTERGENIC
SBS	Chr5	29346484	A-G	Hetero	INTERGENIC
SBS	Chr5	29346540	T-A	Hetero	INTERGENIC
SBS	Chr6	9863406	G-A	Hetero	INTERGENIC
SBS	Chr6	29549998	T-A	Homo	INTERGENIC
SBS	Chr7	4076433	T-C	Hetero	INTERGENIC
SBS	Chr7	8424987	T-G	Hetero	INTRON
SBS	Chr8	4154595	A-G	Hetero	INTERGENIC
SBS	Chr8	17858141	C-T	Hetero	INTERGENIC
SBS	Chr8	21670964	C-T	Hetero	INTERGENIC
SBS	Chr9	12098753	G-T	Hetero	INTRON
SBS	Chr10	7876671	G-T	Homo	INTERGENIC
SBS	Chr10	18052912	T-A	Hetero	INTERGENIC
SBS	Chr11	14785415	T-A	Hetero	INTERGENIC
SBS	Chr11	14879398	C-T	Homo	INTERGENIC
SBS	Chr11	23875169	A-G	Hetero	INTERGENIC
SBS	Chr12	1099082	A-T	Hetero	INTERGENIC
SBS	Chr12	6288334	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	156979	156981	2
Deletion	Chr3	624737	624739	2
Deletion	Chr8	627005	627014	9
Deletion	Chr1	2858677	2858679	2
Deletion	Chr11	6167510	6167511	1
Deletion	Chr2	6475564	6475570	6
Deletion	Chr11	8328169	8328176	7
Deletion	Chr8	9570877	9570878	1
Deletion	Chr6	13723383	13723385	2
Deletion	Chr2	13826557	13826875	318
Deletion	Chr11	14515056	14515071	15
Deletion	Chr8	16201434	16201435	1
Deletion	Chr12	18621365	18621376	11
Deletion	Chr12	19965714	19965716	2
Deletion	Chr12	20526154	20526160	6
Deletion	Chr7	23295429	23295438	9
Deletion	Chr5	26139924	26139925	1
Deletion	Chr8	26144135	26144147	12
Deletion	Chr1	36092862	36092864	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes