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Mutant Information

Mutant Name	FN4031-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4031-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12657039 G-T Hetero INTERGENIC
SBS Chr1 39647669 C-G Hetero UTR_5_PRIME
SBS Chr1 41116108 T-C Hetero INTERGENIC
SBS Chr2 11544040 G-A Hetero INTERGENIC
SBS Chr3 198935 A-G Hetero INTERGENIC
SBS Chr3 20106343 G-A Hetero INTERGENIC
SBS Chr3 22435395 T-C Hetero INTERGENIC
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 26136634 C-G Hetero INTERGENIC
SBS Chr3 29138032 G-A Homo INTERGENIC
SBS Chr4 430478 G-T Hetero UTR_3_PRIME
SBS Chr4 3940995 A-T Hetero INTERGENIC
SBS Chr4 13343655 A-C Hetero INTERGENIC
SBS Chr4 14739768 C-T Hetero INTERGENIC
SBS Chr4 16018728 T-C Homo INTERGENIC
SBS Chr4 26059130 T-C Homo INTERGENIC
SBS Chr7 9171383 T-A Homo INTERGENIC
SBS Chr7 20717689 C-T Homo INTERGENIC
SBS Chr7 21025769 T-A Homo INTRON
SBS Chr8 14040108 G-A Hetero INTERGENIC
SBS Chr8 16341110 C-G Homo INTERGENIC
SBS Chr8 20609510 T-A Homo INTERGENIC
SBS Chr8 24361816 C-A Hetero INTERGENIC
SBS Chr9 13819237 C-A Homo INTERGENIC
SBS Chr9 13884514 G-A Homo SYNONYMOUS_CODING
SBS Chr10 2268743 C-T Homo UTR_5_PRIME
SBS Chr10 5797959 A-C Hetero INTERGENIC
SBS Chr11 11960885 G-A Hetero INTERGENIC
SBS Chr11 13374635 A-T Hetero INTERGENIC
SBS Chr11 17491685 G-A Hetero INTERGENIC
SBS Chr11 20170841 C-T Homo INTERGENIC
SBS Chr12 6337223 G-T Homo INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2495745 2495746 1
Deletion Chr11 3498080 3498093 13 OsKitaake11g048400
Deletion Chr6 3712087 3712088 1
Deletion Chr8 3833828 3833836 8 OsKitaake08g044400
Deletion Chr6 5374144 5374146 2
Deletion Chr5 5376549 5376561 12
Deletion Chr6 7330362 7330364 2
Deletion Chr2 7376998 7377006 8
Deletion Chr2 8371452 8371458 6
Deletion Chr2 9652024 9652031 7
Deletion Chr2 11035830 11035844 14
Deletion Chr11 12576775 12576786 11
Deletion Chr10 16326001 16592000 265999 34
Deletion Chr8 17009932 17009937 5
Deletion Chr12 17494068 17494074 6 OsKitaake12g128800
Deletion Chr11 20138634 20138731 97
Deletion Chr10 21941978 21941983 5
Deletion Chr10 22754993 22754994 1
Deletion Chr10 23172445 23172449 4
Deletion Chr1 23692627 23692628 1
Deletion Chr3 24043016 24043021 5
Deletion Chr7 25129700 25129703 3
Deletion Chr5 26136001 26162000 25999 5
Deletion Chr1 29050416 29050420 4
Deletion Chr1 29841789 29841813 24
Deletion Chr1 39090669 39090671 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30637164 30637166 1 OsKitaake01g303500
Insertion Chr11 2902754 2902757 2
Insertion Chr11 19899294 19899298 3
Insertion Chr6 17787184 17787187 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12657039	G-T	Hetero	INTERGENIC
SBS	Chr1	39647669	C-G	Hetero	UTR_5_PRIME
SBS	Chr1	41116108	T-C	Hetero	INTERGENIC
SBS	Chr2	11544040	G-A	Hetero	INTERGENIC
SBS	Chr3	198935	A-G	Hetero	INTERGENIC
SBS	Chr3	20106343	G-A	Hetero	INTERGENIC
SBS	Chr3	22435395	T-C	Hetero	INTERGENIC
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	26136634	C-G	Hetero	INTERGENIC
SBS	Chr3	29138032	G-A	Homo	INTERGENIC
SBS	Chr4	430478	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	3940995	A-T	Hetero	INTERGENIC
SBS	Chr4	13343655	A-C	Hetero	INTERGENIC
SBS	Chr4	14739768	C-T	Hetero	INTERGENIC
SBS	Chr4	16018728	T-C	Homo	INTERGENIC
SBS	Chr4	26059130	T-C	Homo	INTERGENIC
SBS	Chr7	9171383	T-A	Homo	INTERGENIC
SBS	Chr7	20717689	C-T	Homo	INTERGENIC
SBS	Chr7	21025769	T-A	Homo	INTRON
SBS	Chr8	14040108	G-A	Hetero	INTERGENIC
SBS	Chr8	16341110	C-G	Homo	INTERGENIC
SBS	Chr8	20609510	T-A	Homo	INTERGENIC
SBS	Chr8	24361816	C-A	Hetero	INTERGENIC
SBS	Chr9	13819237	C-A	Homo	INTERGENIC
SBS	Chr9	13884514	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	2268743	C-T	Homo	UTR_5_PRIME
SBS	Chr10	5797959	A-C	Hetero	INTERGENIC
SBS	Chr11	11960885	G-A	Hetero	INTERGENIC
SBS	Chr11	13374635	A-T	Hetero	INTERGENIC
SBS	Chr11	17491685	G-A	Hetero	INTERGENIC
SBS	Chr11	20170841	C-T	Homo	INTERGENIC
SBS	Chr12	6337223	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2495745	2495746	1
Deletion	Chr11	3498080	3498093	13	OsKitaake11g048400
Deletion	Chr6	3712087	3712088	1
Deletion	Chr8	3833828	3833836	8	OsKitaake08g044400
Deletion	Chr6	5374144	5374146	2
Deletion	Chr5	5376549	5376561	12
Deletion	Chr6	7330362	7330364	2
Deletion	Chr2	7376998	7377006	8
Deletion	Chr2	8371452	8371458	6
Deletion	Chr2	9652024	9652031	7
Deletion	Chr2	11035830	11035844	14
Deletion	Chr11	12576775	12576786	11
Deletion	Chr10	16326001	16592000	265999	34
Deletion	Chr8	17009932	17009937	5
Deletion	Chr12	17494068	17494074	6	OsKitaake12g128800
Deletion	Chr11	20138634	20138731	97
Deletion	Chr10	21941978	21941983	5
Deletion	Chr10	22754993	22754994	1
Deletion	Chr10	23172445	23172449	4
Deletion	Chr1	23692627	23692628	1
Deletion	Chr3	24043016	24043021	5
Deletion	Chr7	25129700	25129703	3
Deletion	Chr5	26136001	26162000	25999	5
Deletion	Chr1	29050416	29050420	4
Deletion	Chr1	29841789	29841813	24
Deletion	Chr1	39090669	39090671	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes