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Mutant Information

Mutant Name	FN4032-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4032-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5692938 T-G Hetero INTERGENIC
SBS Chr1 28459357 T-A Hetero INTERGENIC
SBS Chr2 3811215 C-T Hetero INTERGENIC
SBS Chr2 24976254 A-T Homo INTERGENIC
SBS Chr2 31204780 G-T Hetero INTERGENIC
SBS Chr2 32084875 G-A Hetero UTR_5_PRIME
SBS Chr2 32084897 G-A Hetero UTR_5_PRIME
SBS Chr2 34696540 C-T Homo INTERGENIC
SBS Chr3 25286598 C-A Hetero INTRON
SBS Chr3 37372567 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g420000
SBS Chr4 16667960 G-A Hetero INTERGENIC
SBS Chr4 28088804 C-T Hetero INTERGENIC
SBS Chr5 13998160 C-T Hetero INTERGENIC
SBS Chr5 16377308 G-A Homo INTERGENIC
SBS Chr5 24569638 C-A Homo INTERGENIC
SBS Chr6 1771955 C-T Hetero INTERGENIC
SBS Chr6 1776268 C-T Hetero INTRON
SBS Chr6 6756471 T-C Homo INTERGENIC
SBS Chr6 23405382 A-T Homo STOP_GAINED OsKitaake06g206100
SBS Chr6 27233448 A-C Hetero INTERGENIC
SBS Chr7 3489401 C-T Homo INTERGENIC
SBS Chr7 15253849 C-A Homo INTRON
SBS Chr7 15253850 T-C Homo INTRON
SBS Chr8 3454403 T-G Homo NON_SYNONYMOUS_CODING OsKitaake08g038700
SBS Chr8 15204975 G-A Homo INTERGENIC
SBS Chr8 15780677 A-T Homo INTERGENIC
SBS Chr10 20184789 C-T Homo INTERGENIC
SBS Chr11 2176258 C-T Homo INTERGENIC
SBS Chr11 11347983 T-A Homo INTERGENIC
SBS Chr11 11612896 G-A Homo INTERGENIC
SBS Chr11 15734686 A-T Homo INTERGENIC
SBS Chr11 15734687 G-T Homo INTERGENIC
SBS Chr11 24807073 T-A Homo INTERGENIC
SBS Chr11 26943732 T-C Homo INTERGENIC
SBS Chr11 27771968 A-G Hetero START_GAINED
SBS Chr12 2888466 C-T Homo INTERGENIC
SBS Chr12 19756413 A-T Homo INTERGENIC
SBS Chr12 19756414 T-C Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3212826 3212844 18
Deletion Chr1 3226108 3226200 92
Deletion Chr10 4424717 4424718 1
Deletion Chr12 5021500 5021526 26
Deletion Chr6 5523209 5523210 1
Deletion Chr6 8727631 8727653 22
Deletion Chr10 8740444 8740445 1
Deletion Chr12 10407100 10407107 7
Deletion Chr2 11687439 11687453 14
Deletion Chr4 12970634 12970656 22
Deletion Chr3 14811648 14811657 9
Deletion Chr7 19971001 19981000 9999 2
Deletion Chr7 20008001 20050000 41999 7
Deletion Chr9 20523039 20523051 12
Deletion Chr4 24699466 24699496 30
Deletion Chr6 27536936 27536940 4
Deletion Chr11 28175228 28175233 5
Deletion Chr3 34348800 34348803 3
Deletion Chr1 42029918 42029925 7

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24602667 24602670 2
Insertion Chr2 36291048 36291052 3
Insertion Chr3 27312956 27312958 1
Insertion Chr5 6268768 6268775 6
Insertion Chr10 2852348 2852356 7

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 23597850 24065741 2
Inversion Chr7 23597852 24065741 2
Inversion Chr8 25590805 25831869 OsKitaake08g205000
Inversion Chr8 25590818 25831892 OsKitaake08g205000
Inversion Chr1 37892338 37897851 OsKitaake01g404400
Inversion Chr1 37892345 37897884 OsKitaake01g404400

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 20010023 Chr1 38176722 2
Translocation Chr7 20046244 Chr1 38173879 2
Translocation Chr11 29498804 Chr7 19986071
Translocation Chr11 29498816 Chr7 19980747

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5692938	T-G	Hetero	INTERGENIC
SBS	Chr1	28459357	T-A	Hetero	INTERGENIC
SBS	Chr2	3811215	C-T	Hetero	INTERGENIC
SBS	Chr2	24976254	A-T	Homo	INTERGENIC
SBS	Chr2	31204780	G-T	Hetero	INTERGENIC
SBS	Chr2	32084875	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	32084897	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	34696540	C-T	Homo	INTERGENIC
SBS	Chr3	25286598	C-A	Hetero	INTRON
SBS	Chr3	37372567	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g420000
SBS	Chr4	16667960	G-A	Hetero	INTERGENIC
SBS	Chr4	28088804	C-T	Hetero	INTERGENIC
SBS	Chr5	13998160	C-T	Hetero	INTERGENIC
SBS	Chr5	16377308	G-A	Homo	INTERGENIC
SBS	Chr5	24569638	C-A	Homo	INTERGENIC
SBS	Chr6	1771955	C-T	Hetero	INTERGENIC
SBS	Chr6	1776268	C-T	Hetero	INTRON
SBS	Chr6	6756471	T-C	Homo	INTERGENIC
SBS	Chr6	23405382	A-T	Homo	STOP_GAINED	OsKitaake06g206100
SBS	Chr6	27233448	A-C	Hetero	INTERGENIC
SBS	Chr7	3489401	C-T	Homo	INTERGENIC
SBS	Chr7	15253849	C-A	Homo	INTRON
SBS	Chr7	15253850	T-C	Homo	INTRON
SBS	Chr8	3454403	T-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g038700
SBS	Chr8	15204975	G-A	Homo	INTERGENIC
SBS	Chr8	15780677	A-T	Homo	INTERGENIC
SBS	Chr10	20184789	C-T	Homo	INTERGENIC
SBS	Chr11	2176258	C-T	Homo	INTERGENIC
SBS	Chr11	11347983	T-A	Homo	INTERGENIC
SBS	Chr11	11612896	G-A	Homo	INTERGENIC
SBS	Chr11	15734686	A-T	Homo	INTERGENIC
SBS	Chr11	15734687	G-T	Homo	INTERGENIC
SBS	Chr11	24807073	T-A	Homo	INTERGENIC
SBS	Chr11	26943732	T-C	Homo	INTERGENIC
SBS	Chr11	27771968	A-G	Hetero	START_GAINED
SBS	Chr12	2888466	C-T	Homo	INTERGENIC
SBS	Chr12	19756413	A-T	Homo	INTERGENIC
SBS	Chr12	19756414	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3212826	3212844	18
Deletion	Chr1	3226108	3226200	92
Deletion	Chr10	4424717	4424718	1
Deletion	Chr12	5021500	5021526	26
Deletion	Chr6	5523209	5523210	1
Deletion	Chr6	8727631	8727653	22
Deletion	Chr10	8740444	8740445	1
Deletion	Chr12	10407100	10407107	7
Deletion	Chr2	11687439	11687453	14
Deletion	Chr4	12970634	12970656	22
Deletion	Chr3	14811648	14811657	9
Deletion	Chr7	19971001	19981000	9999	2
Deletion	Chr7	20008001	20050000	41999	7
Deletion	Chr9	20523039	20523051	12
Deletion	Chr4	24699466	24699496	30
Deletion	Chr6	27536936	27536940	4
Deletion	Chr11	28175228	28175233	5
Deletion	Chr3	34348800	34348803	3
Deletion	Chr1	42029918	42029925	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	23597850	24065741	2
Inversion	Chr7	23597852	24065741	2
Inversion	Chr8	25590805	25831869	OsKitaake08g205000
Inversion	Chr8	25590818	25831892	OsKitaake08g205000
Inversion	Chr1	37892338	37897851	OsKitaake01g404400
Inversion	Chr1	37892345	37897884	OsKitaake01g404400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes