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| Mutant Information |
|---|
| Mutant Name | FN4036-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4036-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4743040 | C-T | Hetero | INTRON | |
| SBS | Chr1 | 16583171 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 30260379 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34194815 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 28701360 | A-T | Hetero | INTRON | |
| SBS | Chr3 | 10771304 | A-G | Homo | UTR_5_PRIME | |
| SBS | Chr4 | 12862871 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 18002613 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 18689289 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 36791711 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 6849696 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 12571044 | G-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g134200 |
| SBS | Chr6 | 15614588 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 16385376 | T-A | Hetero | INTRON | |
| SBS | Chr7 | 8976582 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16224594 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 17548430 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 17690974 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 23584569 | T-C | Hetero | INTRON | |
| SBS | Chr8 | 25381669 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4939876 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 4939877 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 7500393 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 10708472 | A-G | Hetero | INTRON | |
| SBS | Chr10 | 4285354 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 18440732 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 27668199 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 12837759 | T-C | Homo | INTERGENIC |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 7202787 | 7202796 | 9 | |
| Deletion | Chr11 | 8023593 | 8023595 | 2 | OsKitaake11g088300 |
| Deletion | Chr8 | 13669291 | 13669292 | 1 | |
| Deletion | Chr10 | 15039960 | 15039964 | 4 | |
| Deletion | Chr3 | 18552375 | 18552382 | 7 | |
| Deletion | Chr7 | 23776001 | 23797000 | 20999 | 5 |
| Deletion | Chr2 | 29670107 | 29670110 | 3 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 23676352 | 23676355 | 2 | |
| Insertion | Chr10 | 22851483 | 22851486 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 20632356 | 20772127 | OsKitaake12g162400 |
| Inversion | Chr12 | 20632358 | 20772130 | OsKitaake12g162400 |