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| Mutant Information |
|---|
| Mutant Name | FN4037-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4037-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2226018 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 7955959 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 12118460 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 26122458 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 453268 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31928802 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 26717946 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 29051124 | C-A | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 845232 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 8283408 | T-A | Homo | INTRON | |
| SBS | Chr4 | 10861580 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 18979136 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 5874593 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 12196991 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 17750506 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 17546778 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 17546779 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 28211005 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 11955853 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 12683034 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17922695 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 8431347 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 9707630 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 5528201 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 8915698 | C-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 9332065 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 3284019 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 9231076 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 9231077 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14666100 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26114883 | A-G | Hetero | INTRON |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 267867 | 267868 | 1 | |
| Deletion | Chr7 | 497253 | 497258 | 5 | OsKitaake07g005000 |
| Deletion | Chr11 | 8779552 | 8779556 | 4 | |
| Deletion | Chr12 | 11307001 | 11341000 | 33999 | |
| Deletion | Chr2 | 11966047 | 11966048 | 1 | |
| Deletion | Chr6 | 14882792 | 14882793 | 1 | |
| Deletion | Chr1 | 18050725 | 18050731 | 6 | |
| Deletion | Chr10 | 19319602 | 19319605 | 3 | |
| Deletion | Chr2 | 20178001 | 20300000 | 121999 | 12 |
| Deletion | Chr2 | 22094149 | 22094151 | 2 | |
| Deletion | Chr2 | 25388841 | 25388842 | 1 | OsKitaake02g250000 |
| Deletion | Chr6 | 30120321 | 30120327 | 6 | OsKitaake06g282500 |
| Deletion | Chr1 | 37365394 | 37365411 | 17 | |
| Deletion | Chr1 | 40598981 | 40598982 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 10143285 | 10143288 | 2 | |
| Insertion | Chr10 | 18667883 | 18667886 | 2 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 12908857 | 13024215 | 2 |
| Inversion | Chr7 | 12939970 | 13024229 | OsKitaake07g115100 |
| Inversion | Chr2 | 20005590 | 20175544 | OsKitaake02g196600 |
| Inversion | Chr1 | 39763910 | 39791655 | OsKitaake01g430500 |
| Inversion | Chr1 | 39763918 | 39791661 | OsKitaake01g430500 |