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| Mutant Information |
|---|
| Mutant Name | FN4038-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4038-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 49114 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 13330183 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 27212151 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 40980649 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 9228650 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 32134085 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 18747139 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 10023055 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 22315115 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 27325605 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 25754212 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g226200 |
| SBS | Chr6 | 4565210 | A-G | Homo | INTERGENIC | |
| SBS | Chr6 | 8401242 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 18776249 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 1274611 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 12535575 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 24660298 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 5257743 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 7060676 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 9945597 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 26097351 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 2070632 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 2838308 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 9807310 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 10691354 | A-T | Homo | INTRON | |
| SBS | Chr11 | 19482220 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g152000 |
| SBS | Chr12 | 12928981 | C-T | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 2183401 | 2183403 | 2 | |
| Deletion | Chr12 | 2448999 | 2449014 | 15 | |
| Deletion | Chr4 | 4889001 | 4921000 | 31999 | 2 |
| Deletion | Chr8 | 7342935 | 7342936 | 1 | |
| Deletion | Chr9 | 8956774 | 8956777 | 3 | |
| Deletion | Chr1 | 12219791 | 12219793 | 2 | |
| Deletion | Chr6 | 17476537 | 17476538 | 1 | |
| Deletion | Chr12 | 17594069 | 17594075 | 6 | |
| Deletion | Chr1 | 21669032 | 21669034 | 2 | |
| Deletion | Chr6 | 23534458 | 23534459 | 1 | |
| Deletion | Chr8 | 26783510 | 26783516 | 6 | |
| Deletion | Chr1 | 36592814 | 36592816 | 2 | OsKitaake01g388800 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 8641744 | 8641747 | 2 |
Inversions: 6
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 2145805 | 2315487 | OsKitaake10g016700 |
| Inversion | Chr10 | 2145831 | 2315868 | OsKitaake10g016700 |
| Inversion | Chr2 | 19434082 | 19654193 | OsKitaake02g192100 |
| Inversion | Chr2 | 19434088 | 19654484 | OsKitaake02g192100 |
| Inversion | Chr3 | 27015795 | 27020244 | OsKitaake03g278400 |
| Inversion | Chr3 | 27015796 | 27020242 | OsKitaake03g278400 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 528294 | Chr2 | 19654194 | OsKitaake02g192100 |
| Translocation | Chr10 | 2315494 | Chr3 | 17824122 | |
| Translocation | Chr10 | 2315863 | Chr3 | 17824112 | |
| Translocation | Chr11 | 26013755 | Chr4 | 4929064 | |
| Translocation | Chr11 | 26013762 | Chr4 | 4920289 |