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Mutant Information

Mutant Name	FN4039-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4039-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1587142 C-T Hetero INTERGENIC
SBS Chr1 3482723 G-A Hetero INTERGENIC
SBS Chr1 5732197 G-C Hetero SYNONYMOUS_CODING
SBS Chr1 24025710 C-T Homo INTERGENIC
SBS Chr2 31295065 T-A Hetero INTRON
SBS Chr3 9824176 G-A Hetero INTERGENIC
SBS Chr3 12033085 C-T Hetero INTERGENIC
SBS Chr3 14836147 A-T Hetero INTERGENIC
SBS Chr3 36472054 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g405200
SBS Chr4 3323636 G-T Hetero INTERGENIC
SBS Chr4 3323637 A-G Hetero INTERGENIC
SBS Chr4 5926565 A-T Hetero INTERGENIC
SBS Chr4 11699241 G-T Hetero STOP_GAINED OsKitaake04g056900
SBS Chr4 23426356 T-A Hetero INTERGENIC
SBS Chr4 28882252 C-A Hetero INTERGENIC
SBS Chr4 33320727 T-A Hetero INTERGENIC
SBS Chr4 33320728 T-A Hetero INTERGENIC
SBS Chr5 14588586 C-T Hetero INTERGENIC
SBS Chr5 17242426 G-A Hetero INTERGENIC
SBS Chr5 24402271 A-G Hetero INTERGENIC
SBS Chr6 30701588 G-T Hetero INTRON
SBS Chr7 3230009 T-C Hetero INTRON
SBS Chr7 4534724 C-T Hetero INTERGENIC
SBS Chr7 20669797 G-A Homo INTRON
SBS Chr8 23503338 A-G Hetero INTERGENIC
SBS Chr9 85970 A-C Hetero INTERGENIC
SBS Chr9 85971 G-T Hetero INTERGENIC
SBS Chr9 13677514 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g091800
SBS Chr9 16392356 G-T Hetero INTERGENIC
SBS Chr10 18869256 G-C Hetero INTERGENIC
SBS Chr10 20190239 G-C Hetero INTRON
SBS Chr10 20761682 G-A Hetero INTERGENIC
SBS Chr11 4035829 C-T Homo INTERGENIC
SBS Chr11 24036737 G-C Hetero INTERGENIC
SBS Chr11 25432626 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g204900
SBS Chr12 13480941 G-T Homo INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1017270 1017273 3 OsKitaake07g013100
Deletion Chr7 1128914 1128923 9
Deletion Chr2 1556037 1556040 3
Deletion Chr4 4488878 4488884 6
Deletion Chr12 4895202 4895214 12
Deletion Chr12 5880169 5880175 6
Deletion Chr1 7551557 7551568 11
Deletion Chr11 7593376 7593383 7
Deletion Chr12 8809811 8809812 1
Deletion Chr7 13615440 13615450 10
Deletion Chr11 13806342 13806351 9
Deletion Chr3 14854615 14854623 8
Deletion Chr2 15044323 15044328 5
Deletion Chr7 21076736 21076742 6
Deletion Chr4 21541232 21541240 8
Deletion Chr3 22626641 22626648 7
Deletion Chr8 23032008 23032010 2
Deletion Chr4 28252111 28252114 3
Deletion Chr3 31465635 31465636 1
Deletion Chr1 32005111 32005120 9

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 528238 1037090
Inversion Chr8 528250 1037094
Inversion Chr8 24748592 25216235 OsKitaake08g196700
Inversion Chr8 24748650 25216276 OsKitaake08g196700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1587142	C-T	Hetero	INTERGENIC
SBS	Chr1	3482723	G-A	Hetero	INTERGENIC
SBS	Chr1	5732197	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	24025710	C-T	Homo	INTERGENIC
SBS	Chr2	31295065	T-A	Hetero	INTRON
SBS	Chr3	9824176	G-A	Hetero	INTERGENIC
SBS	Chr3	12033085	C-T	Hetero	INTERGENIC
SBS	Chr3	14836147	A-T	Hetero	INTERGENIC
SBS	Chr3	36472054	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g405200
SBS	Chr4	3323636	G-T	Hetero	INTERGENIC
SBS	Chr4	3323637	A-G	Hetero	INTERGENIC
SBS	Chr4	5926565	A-T	Hetero	INTERGENIC
SBS	Chr4	11699241	G-T	Hetero	STOP_GAINED	OsKitaake04g056900
SBS	Chr4	23426356	T-A	Hetero	INTERGENIC
SBS	Chr4	28882252	C-A	Hetero	INTERGENIC
SBS	Chr4	33320727	T-A	Hetero	INTERGENIC
SBS	Chr4	33320728	T-A	Hetero	INTERGENIC
SBS	Chr5	14588586	C-T	Hetero	INTERGENIC
SBS	Chr5	17242426	G-A	Hetero	INTERGENIC
SBS	Chr5	24402271	A-G	Hetero	INTERGENIC
SBS	Chr6	30701588	G-T	Hetero	INTRON
SBS	Chr7	3230009	T-C	Hetero	INTRON
SBS	Chr7	4534724	C-T	Hetero	INTERGENIC
SBS	Chr7	20669797	G-A	Homo	INTRON
SBS	Chr8	23503338	A-G	Hetero	INTERGENIC
SBS	Chr9	85970	A-C	Hetero	INTERGENIC
SBS	Chr9	85971	G-T	Hetero	INTERGENIC
SBS	Chr9	13677514	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g091800
SBS	Chr9	16392356	G-T	Hetero	INTERGENIC
SBS	Chr10	18869256	G-C	Hetero	INTERGENIC
SBS	Chr10	20190239	G-C	Hetero	INTRON
SBS	Chr10	20761682	G-A	Hetero	INTERGENIC
SBS	Chr11	4035829	C-T	Homo	INTERGENIC
SBS	Chr11	24036737	G-C	Hetero	INTERGENIC
SBS	Chr11	25432626	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g204900
SBS	Chr12	13480941	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1017270	1017273	3	OsKitaake07g013100
Deletion	Chr7	1128914	1128923	9
Deletion	Chr2	1556037	1556040	3
Deletion	Chr4	4488878	4488884	6
Deletion	Chr12	4895202	4895214	12
Deletion	Chr12	5880169	5880175	6
Deletion	Chr1	7551557	7551568	11
Deletion	Chr11	7593376	7593383	7
Deletion	Chr12	8809811	8809812	1
Deletion	Chr7	13615440	13615450	10
Deletion	Chr11	13806342	13806351	9
Deletion	Chr3	14854615	14854623	8
Deletion	Chr2	15044323	15044328	5
Deletion	Chr7	21076736	21076742	6
Deletion	Chr4	21541232	21541240	8
Deletion	Chr3	22626641	22626648	7
Deletion	Chr8	23032008	23032010	2
Deletion	Chr4	28252111	28252114	3
Deletion	Chr3	31465635	31465636	1
Deletion	Chr1	32005111	32005120	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	528238	1037090
Inversion	Chr8	528250	1037094
Inversion	Chr8	24748592	25216235	OsKitaake08g196700
Inversion	Chr8	24748650	25216276	OsKitaake08g196700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes