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| Mutant Information |
|---|
| Mutant Name | FN404-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN404-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 2869341 | C-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g036800 |
| SBS | Chr1 | 3822876 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 12546279 | G-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr1 | 20517097 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 23140732 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 13201126 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31778234 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 32484970 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 37109875 | G-C | Homo | INTERGENIC | |
| SBS | Chr3 | 18522871 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 27268517 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 55821 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 294240 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 626697 | A-C | Hetero | INTRON | |
| SBS | Chr4 | 2759669 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3089009 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 4303927 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 6393972 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 27109694 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 33023912 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 12946607 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 28999977 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 29379188 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15868744 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 11006661 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 13026405 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 3918709 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 5980373 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12726968 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 12726969 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 3469835 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 16123153 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 3467910 | T-C | Homo | INTERGENIC | |
| SBS | Chr11 | 19257814 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 16135550 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 16135551 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 20649430 | T-C | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 4073615 | 4073617 | 2 | |
| Deletion | Chr9 | 7173643 | 7173648 | 5 | |
| Deletion | Chr6 | 13589798 | 13589807 | 9 | |
| Deletion | Chr6 | 13662283 | 13662284 | 1 | |
| Deletion | Chr5 | 13802469 | 13802470 | 1 | |
| Deletion | Chr12 | 16120295 | 16120297 | 2 | |
| Deletion | Chr6 | 20257315 | 20257316 | 1 | |
| Deletion | Chr4 | 22071979 | 22071982 | 3 | |
| Deletion | Chr7 | 23809186 | 23809187 | 1 | |
| Deletion | Chr4 | 24900140 | 24900155 | 15 | |
| Deletion | Chr7 | 24929031 | 24929043 | 12 | |
| Deletion | Chr6 | 28324116 | 28324125 | 9 | OsKitaake06g258800 |
| Deletion | Chr1 | 41774132 | 41774141 | 9 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 13855581 | 13855584 | 2 | |
| Insertion | Chr5 | 10439397 | 10439399 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 31162931 | 31258644 | |
| Inversion | Chr4 | 33026635 | 33075246 | |
| Inversion | Chr4 | 33026644 | 33075248 |