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Mutant Information

Mutant Name	FN4041-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4041-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 271638 G-A Hetero INTERGENIC
SBS Chr1 1627680 C-G Hetero SYNONYMOUS_CODING
SBS Chr1 28292109 T-C Hetero SYNONYMOUS_CODING
SBS Chr1 34252691 C-T Hetero INTRON
SBS Chr1 35882836 G-A Homo INTERGENIC
SBS Chr1 41360369 G-C Hetero INTERGENIC
SBS Chr2 5876419 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g081000
SBS Chr2 6287467 T-C Hetero INTRON
SBS Chr3 3913629 G-A Hetero INTERGENIC
SBS Chr3 5024782 A-T Hetero INTERGENIC
SBS Chr3 13856427 C-A Homo INTERGENIC
SBS Chr4 7668791 G-A Homo INTERGENIC
SBS Chr4 9975058 T-C Homo INTERGENIC
SBS Chr4 22313353 G-A Hetero INTERGENIC
SBS Chr4 22313355 T-A Hetero INTERGENIC
SBS Chr4 22342606 C-T Hetero INTERGENIC
SBS Chr4 24747089 G-A Hetero INTRON
SBS Chr4 25674388 C-T Homo INTERGENIC
SBS Chr5 15813174 C-T Hetero INTERGENIC
SBS Chr5 23510766 C-G Hetero INTERGENIC
SBS Chr5 27683688 G-A Hetero INTERGENIC
SBS Chr6 7284769 A-T Hetero INTERGENIC
SBS Chr6 8932258 G-T Homo INTERGENIC
SBS Chr6 10501651 G-A Hetero INTERGENIC
SBS Chr8 12510722 G-C Homo INTERGENIC
SBS Chr9 3822486 G-A Hetero INTERGENIC
SBS Chr9 4306262 A-C Hetero INTERGENIC
SBS Chr10 13763166 C-T Hetero INTERGENIC
SBS Chr11 2492317 A-G Homo INTRON
SBS Chr11 4312353 T-C Homo INTERGENIC
SBS Chr11 21965752 A-G Hetero INTERGENIC
SBS Chr12 4437614 C-T Hetero INTERGENIC
SBS Chr12 7953361 G-T Hetero INTRON

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 9072237 9072239 2
Deletion Chr12 12120001 12199000 78999 3
Deletion Chr12 12203001 12352000 148999 2
Deletion Chr12 12356001 12378000 21999
Deletion Chr3 17358936 17359015 79
Deletion Chr3 25941349 25941350 1
Deletion Chr3 29219760 29219771 11
Deletion Chr1 40514986 40514987 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 25354000 25354003 2
Insertion Chr12 14779926 14779928 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 23724454 23895576 OsKitaake02g233100
Inversion Chr2 23724472 23895579 OsKitaake02g233100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	271638	G-A	Hetero	INTERGENIC
SBS	Chr1	1627680	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	28292109	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	34252691	C-T	Hetero	INTRON
SBS	Chr1	35882836	G-A	Homo	INTERGENIC
SBS	Chr1	41360369	G-C	Hetero	INTERGENIC
SBS	Chr2	5876419	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g081000
SBS	Chr2	6287467	T-C	Hetero	INTRON
SBS	Chr3	3913629	G-A	Hetero	INTERGENIC
SBS	Chr3	5024782	A-T	Hetero	INTERGENIC
SBS	Chr3	13856427	C-A	Homo	INTERGENIC
SBS	Chr4	7668791	G-A	Homo	INTERGENIC
SBS	Chr4	9975058	T-C	Homo	INTERGENIC
SBS	Chr4	22313353	G-A	Hetero	INTERGENIC
SBS	Chr4	22313355	T-A	Hetero	INTERGENIC
SBS	Chr4	22342606	C-T	Hetero	INTERGENIC
SBS	Chr4	24747089	G-A	Hetero	INTRON
SBS	Chr4	25674388	C-T	Homo	INTERGENIC
SBS	Chr5	15813174	C-T	Hetero	INTERGENIC
SBS	Chr5	23510766	C-G	Hetero	INTERGENIC
SBS	Chr5	27683688	G-A	Hetero	INTERGENIC
SBS	Chr6	7284769	A-T	Hetero	INTERGENIC
SBS	Chr6	8932258	G-T	Homo	INTERGENIC
SBS	Chr6	10501651	G-A	Hetero	INTERGENIC
SBS	Chr8	12510722	G-C	Homo	INTERGENIC
SBS	Chr9	3822486	G-A	Hetero	INTERGENIC
SBS	Chr9	4306262	A-C	Hetero	INTERGENIC
SBS	Chr10	13763166	C-T	Hetero	INTERGENIC
SBS	Chr11	2492317	A-G	Homo	INTRON
SBS	Chr11	4312353	T-C	Homo	INTERGENIC
SBS	Chr11	21965752	A-G	Hetero	INTERGENIC
SBS	Chr12	4437614	C-T	Hetero	INTERGENIC
SBS	Chr12	7953361	G-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	9072237	9072239	2
Deletion	Chr12	12120001	12199000	78999	3
Deletion	Chr12	12203001	12352000	148999	2
Deletion	Chr12	12356001	12378000	21999
Deletion	Chr3	17358936	17359015	79
Deletion	Chr3	25941349	25941350	1
Deletion	Chr3	29219760	29219771	11
Deletion	Chr1	40514986	40514987	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	23724454	23895576	OsKitaake02g233100
Inversion	Chr2	23724472	23895579	OsKitaake02g233100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes