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Mutant Information

Mutant Name	FN4043-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4043-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8204978 A-C Hetero INTERGENIC
SBS Chr2 1095737 A-G Hetero INTERGENIC
SBS Chr2 14572605 G-A Homo INTERGENIC
SBS Chr2 16436888 A-G Hetero INTERGENIC
SBS Chr2 17491791 G-T Hetero INTERGENIC
SBS Chr2 17969870 C-G Hetero INTERGENIC
SBS Chr2 32116058 A-G Homo INTRON
SBS Chr4 4799819 A-T Hetero INTERGENIC
SBS Chr4 9886879 T-G Homo INTERGENIC
SBS Chr4 9886882 G-C Homo INTERGENIC
SBS Chr4 13880624 T-G Homo INTERGENIC
SBS Chr4 29205473 A-T Homo INTRON
SBS Chr4 34530842 G-A Homo INTERGENIC
SBS Chr4 35731065 G-A Hetero UTR_5_PRIME
SBS Chr5 8200055 T-C Hetero INTERGENIC
SBS Chr5 8637328 T-C Hetero INTRON
SBS Chr5 17261854 A-T Homo INTERGENIC
SBS Chr6 28055064 C-T Homo INTRON
SBS Chr8 21521993 C-T Homo INTERGENIC
SBS Chr8 23732491 C-T Hetero INTERGENIC
SBS Chr9 5471839 G-C Hetero INTERGENIC
SBS Chr9 5829730 C-A Hetero INTRON
SBS Chr9 9884843 C-T Hetero INTERGENIC
SBS Chr9 13458425 C-G Hetero INTERGENIC
SBS Chr9 16773955 T-C Homo INTERGENIC
SBS Chr9 22272385 A-G Hetero INTRON
SBS Chr10 2182936 A-G Hetero INTERGENIC
SBS Chr10 4027005 G-A Hetero INTERGENIC
SBS Chr10 14033226 C-A Hetero INTRON
SBS Chr11 11892035 G-A Hetero INTERGENIC
SBS Chr12 18429767 G-T Hetero INTERGENIC
SBS Chr12 24014494 T-A Hetero INTERGENIC
SBS Chr12 25160584 T-A Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1356795 1356812 17
Deletion Chr3 1622256 1622257 1
Deletion Chr8 3526599 3526601 2
Deletion Chr10 4005998 4006002 4
Deletion Chr11 4172531 4172532 1
Deletion Chr10 5528586 5528590 4
Deletion Chr7 7059589 7059595 6
Deletion Chr6 7172378 7172381 3 OsKitaake06g092500
Deletion Chr12 7183501 7183503 2
Deletion Chr3 8572691 8572692 1
Deletion Chr1 9335764 9335788 24
Deletion Chr8 12159883 12159890 7
Deletion Chr9 13454278 13454280 2
Deletion Chr2 18672344 18672346 2
Deletion Chr1 19531916 19531920 4
Deletion Chr2 20296001 20352000 55999 6
Deletion Chr1 20673829 20673830 1
Deletion Chr8 21521475 21521480 5
Deletion Chr2 21870985 21870986 1
Deletion Chr9 22410879 22410881 2
Deletion Chr6 22475214 22475216 2
Deletion Chr4 32124908 32124927 19 OsKitaake04g255400
Deletion Chr1 32205001 32246000 40999 6
Deletion Chr1 33136681 33136683 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 23241461 23241464 2
Insertion Chr8 10709259 10709262 2
Insertion Chr9 7417914 7417917 2
Insertion Chr10 20712997 20713000 2
Insertion Chr11 7413998 7414003 4
Insertion Chr12 17566882 17566887 4

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 13752627 14751040 OsKitaake01g159600
Inversion Chr1 13752649 14465609 OsKitaake01g159600
Inversion Chr1 16247045 16294391 OsKitaake01g175300
Inversion Chr2 20194273 20297558
Inversion Chr2 20194277 20352581

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8204978	A-C	Hetero	INTERGENIC
SBS	Chr2	1095737	A-G	Hetero	INTERGENIC
SBS	Chr2	14572605	G-A	Homo	INTERGENIC
SBS	Chr2	16436888	A-G	Hetero	INTERGENIC
SBS	Chr2	17491791	G-T	Hetero	INTERGENIC
SBS	Chr2	17969870	C-G	Hetero	INTERGENIC
SBS	Chr2	32116058	A-G	Homo	INTRON
SBS	Chr4	4799819	A-T	Hetero	INTERGENIC
SBS	Chr4	9886879	T-G	Homo	INTERGENIC
SBS	Chr4	9886882	G-C	Homo	INTERGENIC
SBS	Chr4	13880624	T-G	Homo	INTERGENIC
SBS	Chr4	29205473	A-T	Homo	INTRON
SBS	Chr4	34530842	G-A	Homo	INTERGENIC
SBS	Chr4	35731065	G-A	Hetero	UTR_5_PRIME
SBS	Chr5	8200055	T-C	Hetero	INTERGENIC
SBS	Chr5	8637328	T-C	Hetero	INTRON
SBS	Chr5	17261854	A-T	Homo	INTERGENIC
SBS	Chr6	28055064	C-T	Homo	INTRON
SBS	Chr8	21521993	C-T	Homo	INTERGENIC
SBS	Chr8	23732491	C-T	Hetero	INTERGENIC
SBS	Chr9	5471839	G-C	Hetero	INTERGENIC
SBS	Chr9	5829730	C-A	Hetero	INTRON
SBS	Chr9	9884843	C-T	Hetero	INTERGENIC
SBS	Chr9	13458425	C-G	Hetero	INTERGENIC
SBS	Chr9	16773955	T-C	Homo	INTERGENIC
SBS	Chr9	22272385	A-G	Hetero	INTRON
SBS	Chr10	2182936	A-G	Hetero	INTERGENIC
SBS	Chr10	4027005	G-A	Hetero	INTERGENIC
SBS	Chr10	14033226	C-A	Hetero	INTRON
SBS	Chr11	11892035	G-A	Hetero	INTERGENIC
SBS	Chr12	18429767	G-T	Hetero	INTERGENIC
SBS	Chr12	24014494	T-A	Hetero	INTERGENIC
SBS	Chr12	25160584	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1356795	1356812	17
Deletion	Chr3	1622256	1622257	1
Deletion	Chr8	3526599	3526601	2
Deletion	Chr10	4005998	4006002	4
Deletion	Chr11	4172531	4172532	1
Deletion	Chr10	5528586	5528590	4
Deletion	Chr7	7059589	7059595	6
Deletion	Chr6	7172378	7172381	3	OsKitaake06g092500
Deletion	Chr12	7183501	7183503	2
Deletion	Chr3	8572691	8572692	1
Deletion	Chr1	9335764	9335788	24
Deletion	Chr8	12159883	12159890	7
Deletion	Chr9	13454278	13454280	2
Deletion	Chr2	18672344	18672346	2
Deletion	Chr1	19531916	19531920	4
Deletion	Chr2	20296001	20352000	55999	6
Deletion	Chr1	20673829	20673830	1
Deletion	Chr8	21521475	21521480	5
Deletion	Chr2	21870985	21870986	1
Deletion	Chr9	22410879	22410881	2
Deletion	Chr6	22475214	22475216	2
Deletion	Chr4	32124908	32124927	19	OsKitaake04g255400
Deletion	Chr1	32205001	32246000	40999	6
Deletion	Chr1	33136681	33136683	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	13752627	14751040	OsKitaake01g159600
Inversion	Chr1	13752649	14465609	OsKitaake01g159600
Inversion	Chr1	16247045	16294391	OsKitaake01g175300
Inversion	Chr2	20194273	20297558
Inversion	Chr2	20194277	20352581

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes