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| Mutant Information |
|---|
| Mutant Name | FN4044-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4044-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7641005 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 20610205 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 16991105 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33709630 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake02g348600 |
| SBS | Chr2 | 34379994 | T-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr3 | 14640075 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 20762693 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30114760 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 30369374 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g318500 |
| SBS | Chr3 | 31653238 | C-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 35743127 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 192894 | T-C | Homo | INTRON | |
| SBS | Chr4 | 24209339 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 24209343 | G-A | Homo | INTERGENIC | |
| SBS | Chr5 | 20235863 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 26444236 | G-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 27880259 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 27880260 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 24947755 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake06g221800 |
| SBS | Chr7 | 17726129 | G-C | Hetero | INTRON | |
| SBS | Chr7 | 29113491 | G-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g278200 |
| SBS | Chr8 | 10098485 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 12360244 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 28676870 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 14759561 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 22745279 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr12 | 26161825 | G-A | Hetero | UTR_5_PRIME |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 1635108 | 1635109 | 1 | |
| Deletion | Chr7 | 6774995 | 6774996 | 1 | |
| Deletion | Chr3 | 7899084 | 7899085 | 1 | |
| Deletion | Chr6 | 9593738 | 9593739 | 1 | |
| Deletion | Chr8 | 10377001 | 10444000 | 66999 | 5 |
| Deletion | Chr7 | 10906716 | 10906717 | 1 | OsKitaake07g103400 |
| Deletion | Chr9 | 20468599 | 20468603 | 4 | |
| Deletion | Chr10 | 20497190 | 20497199 | 9 | |
| Deletion | Chr4 | 36875012 | 36875013 | 1 | |
| Deletion | Chr1 | 40532503 | 40532507 | 4 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 13541845 | 13541848 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 104052 | 632118 | OsKitaake12g001100 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 103885 | Chr8 | 25215740 | 2 |
| Translocation | Chr12 | 632114 | Chr8 | 25216457 | OsKitaake08g196700 |