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| Mutant Information |
|---|
| Mutant Name | FN4046-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4046-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 34
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 11515250 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 14193924 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 15227035 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 35702971 | G-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 43668723 | T-A | Homo | INTRON | |
| SBS | Chr2 | 11008943 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 18541405 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 22286503 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 4155542 | A-C | Homo | INTERGENIC | |
| SBS | Chr3 | 14018452 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 20143695 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 29702366 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 6320312 | G-A | Homo | INTRON | |
| SBS | Chr4 | 10446609 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 29135136 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 12927364 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 18532796 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 26081523 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 26923505 | A-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 27894068 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g256600 |
| SBS | Chr6 | 17188281 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 29257619 | C-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g271000 |
| SBS | Chr7 | 7765173 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 16363354 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 7939339 | T-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 8471104 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 29010109 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 14814828 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 13165178 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 15797740 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 6725134 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 10083530 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 14760495 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 21654507 | T-C | Hetero | INTERGENIC |
Deletions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 42452 | 42453 | 1 | OsKitaake11g000096 |
| Deletion | Chr1 | 6312001 | 6323000 | 10999 | |
| Deletion | Chr4 | 13913025 | 13913032 | 7 | |
| Deletion | Chr7 | 19425811 | 19425816 | 5 | |
| Deletion | Chr3 | 33507217 | 33507225 | 8 | |
| Deletion | Chr4 | 36042969 | 36042978 | 9 | OsKitaake04g310000 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 4309211 | 4309214 | 2 | |
| Insertion | Chr10 | 246650 | 246654 | 3 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 13816454 | 14325605 | OsKitaake11g119900 |
| Inversion | Chr11 | 13816460 | 14325612 | OsKitaake11g119900 |
| Inversion | Chr4 | 20730857 | 21034353 | 2 |
| Inversion | Chr4 | 21034362 | 21185745 | 2 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 11922389 | Chr6 | 16020224 | OsKitaake06g154000 |
| Translocation | Chr11 | 13566221 | Chr1 | 39224961 | |
| Translocation | Chr11 | 13569143 | Chr1 | 39224972 |