Search Kitaake

Mutant Information

Mutant Name	FN4047-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4047-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2723697 C-T Homo INTERGENIC
SBS Chr1 11061438 T-C Homo INTERGENIC
SBS Chr1 37627137 C-T Homo INTRON
SBS Chr1 44265287 C-A Homo INTERGENIC
SBS Chr2 36297367 C-A Homo INTERGENIC
SBS Chr3 9143546 G-A Hetero INTERGENIC
SBS Chr3 20320475 C-T Hetero INTERGENIC
SBS Chr3 37588777 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g422100
SBS Chr4 8104589 T-A Hetero INTERGENIC
SBS Chr4 24810069 G-A Hetero SPLICE_SITE_REGION
SBS Chr4 36501571 T-A Hetero INTERGENIC
SBS Chr5 2546650 G-A Hetero INTERGENIC
SBS Chr5 17586064 T-G Homo INTERGENIC
SBS Chr6 15895080 G-A Homo INTERGENIC
SBS Chr6 18676242 G-A Hetero INTERGENIC
SBS Chr8 11284140 A-G Homo INTERGENIC
SBS Chr8 12028775 A-G Homo INTRON
SBS Chr8 20439750 T-C Homo INTERGENIC
SBS Chr8 23330124 A-C Hetero INTERGENIC
SBS Chr8 26608731 G-C Homo INTERGENIC
SBS Chr8 26608732 C-T Homo INTERGENIC
SBS Chr9 10822274 G-A Homo INTERGENIC
SBS Chr9 14336729 C-T Homo INTERGENIC
SBS Chr9 19281921 G-A Homo NON_SYNONYMOUS_CODING OsKitaake09g156100
SBS Chr9 19281922 A-T Homo NON_SYNONYMOUS_CODING OsKitaake09g156100
SBS Chr9 21896198 G-C Hetero INTERGENIC
SBS Chr10 3065863 G-A Hetero INTERGENIC
SBS Chr11 17666037 G-A Homo SYNONYMOUS_CODING
SBS Chr11 20095735 C-T Hetero INTRON
SBS Chr12 4430026 T-C Homo INTERGENIC
SBS Chr12 20557119 A-G Hetero INTERGENIC
SBS Chr12 26335886 G-A Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 201379 201387 8
Deletion Chr12 2759119 2759129 10
Deletion Chr6 3193045 3193055 10 OsKitaake06g044600
Deletion Chr8 4378332 4378339 7 OsKitaake08g049700
Deletion Chr1 6490001 6501000 10999 2
Deletion Chr2 9182745 9182747 2
Deletion Chr1 9253164 9253173 9
Deletion Chr11 12482728 12482737 9
Deletion Chr1 12899164 12899169 5
Deletion Chr5 14113996 14113998 2
Deletion Chr8 20818187 20818195 8
Deletion Chr11 23571001 23771000 199999 19
Deletion Chr12 25764738 25764748 10
Deletion Chr3 26195767 26195771 4
Deletion Chr2 27224292 27224306 14
Deletion Chr8 27617590 27617597 7
Deletion Chr5 27920592 27920593 1
Deletion Chr1 34018563 34018564 1
Deletion Chr1 34763612 34763624 12

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 26239827 26239835 7
Insertion Chr4 4414990 4414992 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 1969125 2304648
Inversion Chr9 1969128 2304656
Inversion Chr1 7887478 7901147
Inversion Chr1 7901153 8001748
Inversion Chr12 19021017 19278688

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2723697	C-T	Homo	INTERGENIC
SBS	Chr1	11061438	T-C	Homo	INTERGENIC
SBS	Chr1	37627137	C-T	Homo	INTRON
SBS	Chr1	44265287	C-A	Homo	INTERGENIC
SBS	Chr2	36297367	C-A	Homo	INTERGENIC
SBS	Chr3	9143546	G-A	Hetero	INTERGENIC
SBS	Chr3	20320475	C-T	Hetero	INTERGENIC
SBS	Chr3	37588777	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g422100
SBS	Chr4	8104589	T-A	Hetero	INTERGENIC
SBS	Chr4	24810069	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr4	36501571	T-A	Hetero	INTERGENIC
SBS	Chr5	2546650	G-A	Hetero	INTERGENIC
SBS	Chr5	17586064	T-G	Homo	INTERGENIC
SBS	Chr6	15895080	G-A	Homo	INTERGENIC
SBS	Chr6	18676242	G-A	Hetero	INTERGENIC
SBS	Chr8	11284140	A-G	Homo	INTERGENIC
SBS	Chr8	12028775	A-G	Homo	INTRON
SBS	Chr8	20439750	T-C	Homo	INTERGENIC
SBS	Chr8	23330124	A-C	Hetero	INTERGENIC
SBS	Chr8	26608731	G-C	Homo	INTERGENIC
SBS	Chr8	26608732	C-T	Homo	INTERGENIC
SBS	Chr9	10822274	G-A	Homo	INTERGENIC
SBS	Chr9	14336729	C-T	Homo	INTERGENIC
SBS	Chr9	19281921	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g156100
SBS	Chr9	19281922	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g156100
SBS	Chr9	21896198	G-C	Hetero	INTERGENIC
SBS	Chr10	3065863	G-A	Hetero	INTERGENIC
SBS	Chr11	17666037	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	20095735	C-T	Hetero	INTRON
SBS	Chr12	4430026	T-C	Homo	INTERGENIC
SBS	Chr12	20557119	A-G	Hetero	INTERGENIC
SBS	Chr12	26335886	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	201379	201387	8
Deletion	Chr12	2759119	2759129	10
Deletion	Chr6	3193045	3193055	10	OsKitaake06g044600
Deletion	Chr8	4378332	4378339	7	OsKitaake08g049700
Deletion	Chr1	6490001	6501000	10999	2
Deletion	Chr2	9182745	9182747	2
Deletion	Chr1	9253164	9253173	9
Deletion	Chr11	12482728	12482737	9
Deletion	Chr1	12899164	12899169	5
Deletion	Chr5	14113996	14113998	2
Deletion	Chr8	20818187	20818195	8
Deletion	Chr11	23571001	23771000	199999	19
Deletion	Chr12	25764738	25764748	10
Deletion	Chr3	26195767	26195771	4
Deletion	Chr2	27224292	27224306	14
Deletion	Chr8	27617590	27617597	7
Deletion	Chr5	27920592	27920593	1
Deletion	Chr1	34018563	34018564	1
Deletion	Chr1	34763612	34763624	12

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	1969125	2304648
Inversion	Chr9	1969128	2304656
Inversion	Chr1	7887478	7901147
Inversion	Chr1	7901153	8001748
Inversion	Chr12	19021017	19278688

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes