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Mutant Information

Mutant Name	FN4049-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4049-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1686351 G-A Homo INTERGENIC
SBS Chr1 21616904 C-A Homo INTERGENIC
SBS Chr2 2511951 G-A Hetero INTERGENIC
SBS Chr2 11579875 T-C Homo UTR_5_PRIME
SBS Chr2 14452362 T-A Hetero INTERGENIC
SBS Chr2 24452022 C-T Hetero INTERGENIC
SBS Chr3 15657578 G-T Hetero INTRON
SBS Chr3 23511412 C-A Homo INTERGENIC
SBS Chr3 34425196 C-T Homo INTERGENIC
SBS Chr4 7992298 C-T Homo SYNONYMOUS_CODING
SBS Chr4 28087754 A-G Hetero INTERGENIC
SBS Chr4 30713190 C-T Hetero INTRON
SBS Chr6 26653447 T-A Hetero INTERGENIC
SBS Chr7 10529822 C-T Homo INTERGENIC
SBS Chr7 15095218 A-T Hetero INTERGENIC
SBS Chr8 11138986 C-T Hetero INTERGENIC
SBS Chr8 15224876 C-T Hetero INTRON
SBS Chr8 22765246 A-G Hetero INTERGENIC
SBS Chr8 24584657 A-T Hetero INTRON
SBS Chr8 24584658 A-T Hetero INTRON
SBS Chr9 2700692 A-G Hetero INTERGENIC
SBS Chr9 8489738 G-T Homo NON_SYNONYMOUS_CODING OsKitaake09g050100
SBS Chr9 8698525 A-G Hetero INTERGENIC
SBS Chr10 7707566 G-C Homo INTERGENIC
SBS Chr11 7076595 A-T Homo INTERGENIC
SBS Chr11 15706223 T-A Hetero INTERGENIC
SBS Chr11 25736568 T-A Hetero INTERGENIC
SBS Chr12 9911920 T-C Homo INTERGENIC
SBS Chr12 10433076 G-A Homo INTERGENIC
SBS Chr12 16456843 G-A Hetero INTERGENIC
SBS Chr12 18989312 T-A Homo INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 2502063 2502080 17
Deletion Chr1 2656667 2656675 8
Deletion Chr1 6778192 6778198 6
Deletion Chr4 14312408 14312411 3
Deletion Chr2 18722210 18722212 2
Deletion Chr12 20165513 20165514 1
Deletion Chr4 31943001 32005000 61999 7

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31715521 31715525 3
Insertion Chr2 26551266 26551269 2
Insertion Chr3 6045295 6045298 2
Insertion Chr8 615099 615104 4
Insertion Chr12 14364304 14364307 2
Insertion Chr5 11852160 11852162 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 10137062 Chr3 764815 OsKitaake03g012000
Translocation Chr2 11580105 Chr1 29939552
Translocation Chr2 11580114 Chr1 29942050

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1686351	G-A	Homo	INTERGENIC
SBS	Chr1	21616904	C-A	Homo	INTERGENIC
SBS	Chr2	2511951	G-A	Hetero	INTERGENIC
SBS	Chr2	11579875	T-C	Homo	UTR_5_PRIME
SBS	Chr2	14452362	T-A	Hetero	INTERGENIC
SBS	Chr2	24452022	C-T	Hetero	INTERGENIC
SBS	Chr3	15657578	G-T	Hetero	INTRON
SBS	Chr3	23511412	C-A	Homo	INTERGENIC
SBS	Chr3	34425196	C-T	Homo	INTERGENIC
SBS	Chr4	7992298	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr4	28087754	A-G	Hetero	INTERGENIC
SBS	Chr4	30713190	C-T	Hetero	INTRON
SBS	Chr6	26653447	T-A	Hetero	INTERGENIC
SBS	Chr7	10529822	C-T	Homo	INTERGENIC
SBS	Chr7	15095218	A-T	Hetero	INTERGENIC
SBS	Chr8	11138986	C-T	Hetero	INTERGENIC
SBS	Chr8	15224876	C-T	Hetero	INTRON
SBS	Chr8	22765246	A-G	Hetero	INTERGENIC
SBS	Chr8	24584657	A-T	Hetero	INTRON
SBS	Chr8	24584658	A-T	Hetero	INTRON
SBS	Chr9	2700692	A-G	Hetero	INTERGENIC
SBS	Chr9	8489738	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g050100
SBS	Chr9	8698525	A-G	Hetero	INTERGENIC
SBS	Chr10	7707566	G-C	Homo	INTERGENIC
SBS	Chr11	7076595	A-T	Homo	INTERGENIC
SBS	Chr11	15706223	T-A	Hetero	INTERGENIC
SBS	Chr11	25736568	T-A	Hetero	INTERGENIC
SBS	Chr12	9911920	T-C	Homo	INTERGENIC
SBS	Chr12	10433076	G-A	Homo	INTERGENIC
SBS	Chr12	16456843	G-A	Hetero	INTERGENIC
SBS	Chr12	18989312	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	2502063	2502080	17
Deletion	Chr1	2656667	2656675	8
Deletion	Chr1	6778192	6778198	6
Deletion	Chr4	14312408	14312411	3
Deletion	Chr2	18722210	18722212	2
Deletion	Chr12	20165513	20165514	1
Deletion	Chr4	31943001	32005000	61999	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	10137062	Chr3	764815	OsKitaake03g012000
Translocation	Chr2	11580105	Chr1	29939552
Translocation	Chr2	11580114	Chr1	29942050

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes