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| Mutant Information |
|---|
| Mutant Name | FN405-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN405-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 37684266 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 37687045 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr2 | 13776020 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 20708538 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 20931818 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 21315271 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 29216864 | C-A | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 29625281 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 19319515 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29178250 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 1500794 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 7153153 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9545986 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 14220093 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 19382854 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 24722326 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 7391518 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 15873471 | T-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 21133028 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 21133029 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 6374064 | C-A | Homo | INTERGENIC | |
| SBS | Chr8 | 7832853 | G-C | Homo | SYNONYMOUS_CODING | |
| SBS | Chr8 | 15388673 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 15985045 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 24213331 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 29049393 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake08g251900 |
| SBS | Chr9 | 314505 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 314506 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 314507 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 6511081 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24157154 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 24858147 | C-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 1185672 | 1185678 | 6 | |
| Deletion | Chr11 | 2031866 | 2031867 | 1 | |
| Deletion | Chr1 | 4388529 | 4388530 | 1 | OsKitaake01g058300 |
| Deletion | Chr9 | 7769320 | 7769321 | 1 | |
| Deletion | Chr9 | 9879495 | 9879504 | 9 | |
| Deletion | Chr12 | 11674297 | 11674298 | 1 | |
| Deletion | Chr6 | 17271147 | 17271149 | 2 | |
| Deletion | Chr3 | 21265111 | 21265112 | 1 | |
| Deletion | Chr7 | 23546895 | 23546897 | 2 | |
| Deletion | Chr11 | 24484291 | 24484296 | 5 | |
| Deletion | Chr1 | 38637198 | 38637200 | 2 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 89968 | 89971 | 2 | |
| Insertion | Chr6 | 7838 | 7840 | 1 |
Inversions: 100
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 382403 | 382504 | OsKitaake05g005700 |
| Inversion | Chr5 | 944996 | 945176 | |
| Inversion | Chr11 | 1155487 | 1155871 | |
| Inversion | Chr6 | 1878434 | 1878773 | OsKitaake06g023200 |
| Inversion | Chr5 | 2407847 | 2407954 | |
| Inversion | Chr11 | 2430580 | 2430728 | OsKitaake11g035200 |
| Inversion | Chr10 | 2683192 | 2683705 | |
| Inversion | Chr11 | 2918915 | 2919097 | OsKitaake11g041200 |
| Inversion | Chr1 | 3785579 | 3785828 | OsKitaake01g050900 |
| Inversion | Chr5 | 3916737 | 4424746 | OsKitaake05g047100 |
| Inversion | Chr5 | 3916743 | 4376595 | OsKitaake05g047100 |
| Inversion | Chr11 | 4027776 | 4027934 | |
| Inversion | Chr2 | 4123818 | 4123992 | OsKitaake02g058200 |
| Inversion | Chr1 | 4171865 | 4172070 | OsKitaake01g055700 |
| Inversion | Chr2 | 4554479 | 4554591 | |
| Inversion | Chr10 | 4871212 | 4871459 | |
| Inversion | Chr9 | 5046152 | 5046451 | OsKitaake09g029400 |
| Inversion | Chr3 | 5292110 | 5292259 | OsKitaake03g074950 |
| Inversion | Chr2 | 5347776 | 5348074 | OsKitaake02g073700 |
| Inversion | Chr1 | 5824821 | 5824987 | OsKitaake01g073608 |
| Inversion | Chr12 | 6141362 | 6141609 | OsKitaake12g071500 |
| Inversion | Chr3 | 6504091 | 6504389 | OsKitaake03g092700 |
| Inversion | Chr1 | 6754260 | 6754550 | |
| Inversion | Chr4 | 7169723 | 7170250 | OsKitaake04g036300 |
| Inversion | Chr5 | 7493418 | 7493565 | OsKitaake05g075200 |
| Inversion | Chr1 | 7733985 | 7734349 | |
| Inversion | Chr11 | 7915965 | 7916165 | OsKitaake11g087800 |
| Inversion | Chr1 | 8881936 | 8882073 | OsKitaake01g110800 |
| Inversion | Chr6 | 9187423 | 9187526 | |
| Inversion | Chr8 | 9280068 | 9280222 | OsKitaake08g084800 |
| Inversion | Chr1 | 9308018 | 9308136 | OsKitaake01g119400 |
| Inversion | Chr7 | 11309416 | 11309530 | OsKitaake07g106000 |
| Inversion | Chr1 | 11441348 | 11441578 | OsKitaake01g139700 |
| Inversion | Chr7 | 11857411 | 11857717 | |
| Inversion | Chr6 | 12130422 | 12130605 | OsKitaake06g130800 |
| Inversion | Chr8 | 12133315 | 12133684 | OsKitaake08g105700 |
| Inversion | Chr7 | 13988967 | 13989175 | OsKitaake07g120600 |
| Inversion | Chr10 | 14480625 | 14480873 | |
| Inversion | Chr7 | 15451942 | 15452149 | OsKitaake07g128700 |
| Inversion | Chr6 | 16501519 | 16501661 | |
| Inversion | Chr5 | 17476938 | 17477346 | |
| Inversion | Chr11 | 17907292 | 17907693 | OsKitaake11g140200 |
| Inversion | Chr2 | 18308180 | 18308541 | OsKitaake02g181600 |
| Inversion | Chr7 | 18401290 | 18401550 | OsKitaake07g149100 |
| Inversion | Chr9 | 18998224 | 18998490 | |
| Inversion | Chr4 | 20399097 | 20399322 | OsKitaake04g109500 |
| Inversion | Chr10 | 20409408 | 20409592 | |
| Inversion | Chr12 | 20719440 | 20719682 | OsKitaake12g161700 |
| Inversion | Chr3 | 20866841 | 20867020 | |
| Inversion | Chr8 | 21115483 | 21115625 | OsKitaake08g158500 |
| Inversion | Chr5 | 21141061 | 21141347 | |
| Inversion | Chr2 | 21410639 | 21410814 | OsKitaake02g206700 |
| Inversion | Chr9 | 21492121 | 21492441 | |
| Inversion | Chr10 | 22124573 | 22124730 | OsKitaake10g179600 |
| Inversion | Chr4 | 22322134 | 22322291 | |
| Inversion | Chr5 | 22364605 | 22364769 | |
| Inversion | Chr11 | 22689173 | 22689323 | |
| Inversion | Chr2 | 23029059 | 23029409 | |
| Inversion | Chr11 | 23094454 | 23094597 | OsKitaake11g183200 |
| Inversion | Chr5 | 23143506 | 23143634 | |
| Inversion | Chr1 | 23266746 | 23266894 | OsKitaake01g222400 |
| Inversion | Chr5 | 23537677 | 23537917 | OsKitaake05g205100 |
| Inversion | Chr7 | 23563289 | 23563516 | |
| Inversion | Chr5 | 23848875 | 23849176 | OsKitaake05g209600 |
| Inversion | Chr11 | 24022616 | 24022726 | OsKitaake11g193200 |
| Inversion | Chr1 | 24029063 | 24044345 | OsKitaake01g231000 |
| Inversion | Chr1 | 24029073 | 24044347 | OsKitaake01g231000 |
| Inversion | Chr11 | 24199057 | 24199193 | OsKitaake11g194900 |
| Inversion | Chr7 | 24221494 | 24221738 | OsKitaake07g215400 |
| Inversion | Chr7 | 24316941 | 24317266 | OsKitaake07g216200 |
| Inversion | Chr12 | 24362819 | 24362999 | |
| Inversion | Chr8 | 24884062 | 24884249 | |
| Inversion | Chr4 | 24963680 | 24963819 | OsKitaake04g166900 |
| Inversion | Chr1 | 25245919 | 25246135 | OsKitaake01g244500 |
| Inversion | Chr4 | 25591067 | 25591311 | OsKitaake04g177000 |
| Inversion | Chr2 | 25718368 | 25718765 | OsKitaake02g254300 |
| Inversion | Chr11 | 25924971 | 25925189 | |
| Inversion | Chr2 | 26116991 | 26117184 | OsKitaake02g258500 |
| Inversion | Chr4 | 26849889 | 26850507 | |
| Inversion | Chr11 | 26984348 | 26984524 | |
| Inversion | Chr5 | 27713663 | 27713886 | |
| Inversion | Chr6 | 27787431 | 27787769 | |
| Inversion | Chr2 | 28536182 | 28536502 | OsKitaake02g287600 |
| Inversion | Chr1 | 29117230 | 29117344 | OsKitaake01g283000 |
| Inversion | Chr6 | 29240918 | 29241107 | |
| Inversion | Chr1 | 29246373 | 29246524 | |
| Inversion | Chr7 | 29560869 | 29561140 | OsKitaake07g285000 |
| Inversion | Chr3 | 29664157 | 29664334 | OsKitaake03g309500 |
| Inversion | Chr5 | 30077767 | 30078007 | OsKitaake05g289000 |
| Inversion | Chr3 | 30516956 | 30517295 | |
| Inversion | Chr4 | 31615449 | 31615553 | OsKitaake04g249500 |
| Inversion | Chr4 | 34175344 | 34175642 | OsKitaake04g284945 |
| Inversion | Chr3 | 34914890 | 34915046 | OsKitaake03g381200 |
| Inversion | Chr2 | 35384827 | 35384994 | |
| Inversion | Chr1 | 35560521 | 35560836 | OsKitaake01g376300 |
| Inversion | Chr2 | 36066279 | 36066437 | OsKitaake02g380100 |
| Inversion | Chr3 | 37371271 | 37371471 | OsKitaake03g420000 |
| Inversion | Chr1 | 39938791 | 39938899 | OsKitaake01g432100 |
| Inversion | Chr1 | 41707405 | 41707524 | |
| Inversion | Chr1 | 42055296 | 42055438 | OsKitaake01g461900 |