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Mutant Information

Mutant Name	FN4050-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4050-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1290634 C-T Hetero INTERGENIC
SBS Chr1 5675561 G-A Hetero INTERGENIC
SBS Chr1 17358723 C-T Hetero INTERGENIC
SBS Chr1 28012667 C-T Hetero INTERGENIC
SBS Chr1 28072755 C-T Hetero INTERGENIC
SBS Chr1 30390437 C-A Hetero INTERGENIC
SBS Chr1 32136540 G-T Hetero INTERGENIC
SBS Chr1 35722837 T-A Homo INTERGENIC
SBS Chr1 39645856 C-G Homo INTERGENIC
SBS Chr2 8972998 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g112700
SBS Chr3 735571 G-A Homo NON_SYNONYMOUS_CODING OsKitaake03g011500
SBS Chr3 2713618 C-T Homo INTERGENIC
SBS Chr3 18792037 G-A Hetero INTERGENIC
SBS Chr4 7570355 C-A Homo INTERGENIC
SBS Chr4 15209265 G-A Homo INTERGENIC
SBS Chr4 23036462 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g139800
SBS Chr5 17561463 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g134600
SBS Chr6 21897148 G-A Homo INTERGENIC
SBS Chr7 2514742 G-A Homo INTERGENIC
SBS Chr7 7213565 G-A Homo INTERGENIC
SBS Chr7 9605280 T-C Homo INTERGENIC
SBS Chr7 10386802 C-A Homo INTERGENIC
SBS Chr7 24568476 C-A Hetero UTR_3_PRIME
SBS Chr8 451978 C-T Homo STOP_GAINED OsKitaake08g006600
SBS Chr8 3395373 G-T Homo INTERGENIC
SBS Chr8 3395374 A-T Homo INTERGENIC
SBS Chr8 12792077 G-A Homo INTERGENIC
SBS Chr9 10794136 T-C Hetero INTRON
SBS Chr9 15184796 T-C Hetero INTERGENIC
SBS Chr10 7307358 A-T Homo INTERGENIC
SBS Chr11 13583726 C-T Hetero INTERGENIC
SBS Chr11 27609645 A-T Homo INTERGENIC
SBS Chr12 3501755 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g049300
SBS Chr12 14549284 T-C Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1933758 1933759 1
Deletion Chr6 2252084 2252086 2
Deletion Chr9 2944343 2944350 7
Deletion Chr12 3718923 3718925 2
Deletion Chr11 4466806 4466807 1
Deletion Chr5 4714718 4714720 2
Deletion Chr7 6913154 6913155 1
Deletion Chr7 7213551 7213554 3
Deletion Chr7 9127599 9127601 2
Deletion Chr9 11675178 11675186 8
Deletion Chr2 12958921 12958926 5
Deletion Chr2 14288997 14288998 1
Deletion Chr8 14834710 14834712 2
Deletion Chr8 16055129 16055134 5
Deletion Chr10 17760955 17760974 19
Deletion Chr12 18503141 18503142 1
Deletion Chr9 18619759 18619764 5
Deletion Chr1 19526030 19526034 4
Deletion Chr9 20368472 20368478 6
Deletion Chr5 21288926 21288930 4
Deletion Chr7 21939041 21939054 13 OsKitaake07g183900
Deletion Chr4 24637851 24637859 8
Deletion Chr6 26301026 26301059 33
Deletion Chr2 31741571 31741573 2
Deletion Chr1 32712670 32712679 9
Deletion Chr1 41455813 41455818 5

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 626257 626260 2
Insertion Chr1 40877936 40877939 2
Insertion Chr4 2379014 2379016 1
Insertion Chr5 18794861 18794865 3
Insertion Chr6 11295355 11295357 1
Insertion Chr8 21461650 21461653 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1290634	C-T	Hetero	INTERGENIC
SBS	Chr1	5675561	G-A	Hetero	INTERGENIC
SBS	Chr1	17358723	C-T	Hetero	INTERGENIC
SBS	Chr1	28012667	C-T	Hetero	INTERGENIC
SBS	Chr1	28072755	C-T	Hetero	INTERGENIC
SBS	Chr1	30390437	C-A	Hetero	INTERGENIC
SBS	Chr1	32136540	G-T	Hetero	INTERGENIC
SBS	Chr1	35722837	T-A	Homo	INTERGENIC
SBS	Chr1	39645856	C-G	Homo	INTERGENIC
SBS	Chr2	8972998	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g112700
SBS	Chr3	735571	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g011500
SBS	Chr3	2713618	C-T	Homo	INTERGENIC
SBS	Chr3	18792037	G-A	Hetero	INTERGENIC
SBS	Chr4	7570355	C-A	Homo	INTERGENIC
SBS	Chr4	15209265	G-A	Homo	INTERGENIC
SBS	Chr4	23036462	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g139800
SBS	Chr5	17561463	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g134600
SBS	Chr6	21897148	G-A	Homo	INTERGENIC
SBS	Chr7	2514742	G-A	Homo	INTERGENIC
SBS	Chr7	7213565	G-A	Homo	INTERGENIC
SBS	Chr7	9605280	T-C	Homo	INTERGENIC
SBS	Chr7	10386802	C-A	Homo	INTERGENIC
SBS	Chr7	24568476	C-A	Hetero	UTR_3_PRIME
SBS	Chr8	451978	C-T	Homo	STOP_GAINED	OsKitaake08g006600
SBS	Chr8	3395373	G-T	Homo	INTERGENIC
SBS	Chr8	3395374	A-T	Homo	INTERGENIC
SBS	Chr8	12792077	G-A	Homo	INTERGENIC
SBS	Chr9	10794136	T-C	Hetero	INTRON
SBS	Chr9	15184796	T-C	Hetero	INTERGENIC
SBS	Chr10	7307358	A-T	Homo	INTERGENIC
SBS	Chr11	13583726	C-T	Hetero	INTERGENIC
SBS	Chr11	27609645	A-T	Homo	INTERGENIC
SBS	Chr12	3501755	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g049300
SBS	Chr12	14549284	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1933758	1933759	1
Deletion	Chr6	2252084	2252086	2
Deletion	Chr9	2944343	2944350	7
Deletion	Chr12	3718923	3718925	2
Deletion	Chr11	4466806	4466807	1
Deletion	Chr5	4714718	4714720	2
Deletion	Chr7	6913154	6913155	1
Deletion	Chr7	7213551	7213554	3
Deletion	Chr7	9127599	9127601	2
Deletion	Chr9	11675178	11675186	8
Deletion	Chr2	12958921	12958926	5
Deletion	Chr2	14288997	14288998	1
Deletion	Chr8	14834710	14834712	2
Deletion	Chr8	16055129	16055134	5
Deletion	Chr10	17760955	17760974	19
Deletion	Chr12	18503141	18503142	1
Deletion	Chr9	18619759	18619764	5
Deletion	Chr1	19526030	19526034	4
Deletion	Chr9	20368472	20368478	6
Deletion	Chr5	21288926	21288930	4
Deletion	Chr7	21939041	21939054	13	OsKitaake07g183900
Deletion	Chr4	24637851	24637859	8
Deletion	Chr6	26301026	26301059	33
Deletion	Chr2	31741571	31741573	2
Deletion	Chr1	32712670	32712679	9
Deletion	Chr1	41455813	41455818	5

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes