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Mutant Information

Mutant Name	FN4051-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4051-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19197478 C-T Homo INTERGENIC
SBS Chr2 9665896 A-G Homo INTRON
SBS Chr2 14427572 G-A Homo INTERGENIC
SBS Chr2 15399162 C-A Homo INTRON
SBS Chr3 25093780 G-T Hetero SYNONYMOUS_CODING
SBS Chr4 5651057 C-T Hetero INTERGENIC
SBS Chr4 34280381 C-T Hetero INTRON
SBS Chr5 23872 G-C Hetero INTERGENIC
SBS Chr6 3076857 A-G Hetero INTERGENIC
SBS Chr6 6073752 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g080000
SBS Chr6 13730455 T-C Hetero INTRON
SBS Chr6 26607898 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g238800
SBS Chr6 29173124 C-T Hetero INTERGENIC
SBS Chr6 29173125 G-T Hetero INTERGENIC
SBS Chr8 25562729 G-C Hetero INTRON
SBS Chr9 13042522 A-T Hetero INTERGENIC
SBS Chr10 6691854 G-T Hetero INTERGENIC
SBS Chr10 20369780 C-T Homo UTR_3_PRIME
SBS Chr11 27891891 G-A Hetero INTERGENIC
SBS Chr12 7637883 C-T Homo INTERGENIC
SBS Chr12 9196817 T-A Hetero INTERGENIC
SBS Chr12 13929244 C-A Homo INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 4558747 4558752 5
Deletion Chr6 6782141 6782142 1
Deletion Chr4 7026195 7026203 8
Deletion Chr9 13322001 13344000 21999 OsKitaake09g088600
Deletion Chr5 13994001 14012000 17999
Deletion Chr3 14694953 14694954 1 OsKitaake03g191000
Deletion Chr5 14714535 14714550 15
Deletion Chr9 15589145 15589150 5
Deletion Chr5 20595145 20595146 1
Deletion Chr7 21945840 21945846 6
Deletion Chr6 27633874 27633882 8 OsKitaake06g249900
Deletion Chr5 27813172 27813180 8
Deletion Chr6 30015613 30015628 15

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 1623972 1623975 2
Insertion Chr1 2270286 2270294 7
Insertion Chr4 16908461 16908463 1
Insertion Chr12 1677486 1677489 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19197478	C-T	Homo	INTERGENIC
SBS	Chr2	9665896	A-G	Homo	INTRON
SBS	Chr2	14427572	G-A	Homo	INTERGENIC
SBS	Chr2	15399162	C-A	Homo	INTRON
SBS	Chr3	25093780	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	5651057	C-T	Hetero	INTERGENIC
SBS	Chr4	34280381	C-T	Hetero	INTRON
SBS	Chr5	23872	G-C	Hetero	INTERGENIC
SBS	Chr6	3076857	A-G	Hetero	INTERGENIC
SBS	Chr6	6073752	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g080000
SBS	Chr6	13730455	T-C	Hetero	INTRON
SBS	Chr6	26607898	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g238800
SBS	Chr6	29173124	C-T	Hetero	INTERGENIC
SBS	Chr6	29173125	G-T	Hetero	INTERGENIC
SBS	Chr8	25562729	G-C	Hetero	INTRON
SBS	Chr9	13042522	A-T	Hetero	INTERGENIC
SBS	Chr10	6691854	G-T	Hetero	INTERGENIC
SBS	Chr10	20369780	C-T	Homo	UTR_3_PRIME
SBS	Chr11	27891891	G-A	Hetero	INTERGENIC
SBS	Chr12	7637883	C-T	Homo	INTERGENIC
SBS	Chr12	9196817	T-A	Hetero	INTERGENIC
SBS	Chr12	13929244	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	4558747	4558752	5
Deletion	Chr6	6782141	6782142	1
Deletion	Chr4	7026195	7026203	8
Deletion	Chr9	13322001	13344000	21999	OsKitaake09g088600
Deletion	Chr5	13994001	14012000	17999
Deletion	Chr3	14694953	14694954	1	OsKitaake03g191000
Deletion	Chr5	14714535	14714550	15
Deletion	Chr9	15589145	15589150	5
Deletion	Chr5	20595145	20595146	1
Deletion	Chr7	21945840	21945846	6
Deletion	Chr6	27633874	27633882	8	OsKitaake06g249900
Deletion	Chr5	27813172	27813180	8
Deletion	Chr6	30015613	30015628	15

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes