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Mutant Information

Mutant Name	FN4052-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4052-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20240807 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g199200
SBS Chr1 22694136 C-T Homo INTERGENIC
SBS Chr1 24035268 G-A Hetero INTERGENIC
SBS Chr1 27503149 C-T Hetero INTERGENIC
SBS Chr1 32523096 G-A Hetero INTERGENIC
SBS Chr1 37802518 A-T Hetero INTERGENIC
SBS Chr2 10568723 T-C Homo INTERGENIC
SBS Chr2 18837823 C-T Homo INTERGENIC
SBS Chr3 2111801 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g030400
SBS Chr3 12828694 C-T Homo INTRON
SBS Chr3 18330513 T-A Hetero INTERGENIC
SBS Chr4 24025557 A-G Homo INTERGENIC
SBS Chr5 3074232 T-A Hetero UTR_5_PRIME
SBS Chr5 3201808 G-T Hetero SYNONYMOUS_CODING
SBS Chr5 23215688 T-C Homo SPLICE_SITE_REGION
SBS Chr5 25851838 A-T Hetero INTERGENIC
SBS Chr5 29265789 A-G Homo INTERGENIC
SBS Chr7 6029048 C-T Hetero UTR_5_PRIME
SBS Chr7 9029034 A-G Hetero INTERGENIC
SBS Chr7 19960293 C-T Homo INTERGENIC
SBS Chr7 22463188 G-T Homo NON_SYNONYMOUS_CODING OsKitaake07g190600
SBS Chr7 22463189 C-T Homo NON_SYNONYMOUS_CODING OsKitaake07g190600
SBS Chr8 22489046 T-A Hetero INTRON
SBS Chr9 12228558 G-A Hetero INTERGENIC
SBS Chr10 14999915 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g094000
SBS Chr10 23840590 T-A Homo INTERGENIC
SBS Chr11 2526848 A-G Hetero INTERGENIC
SBS Chr11 4952200 C-T Hetero INTERGENIC
SBS Chr11 20642510 C-T Hetero INTERGENIC
SBS Chr12 5093362 G-C Hetero INTERGENIC
SBS Chr12 14487566 T-A Hetero INTERGENIC
SBS Chr12 21439511 C-A Hetero INTERGENIC
SBS Chr12 21548375 T-C Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 900119 900121 2
Deletion Chr11 3015276 3015277 1
Deletion Chr12 4932001 4939000 6999
Deletion Chr4 9866296 9866317 21
Deletion Chr5 12460042 12460067 25
Deletion Chr3 15332463 15332464 1
Deletion Chr5 15833728 15833740 12
Deletion Chr10 18179792 18179796 4
Deletion Chr4 19923759 19923760 1
Deletion Chr3 20210010 20210011 1
Deletion Chr12 21936001 21985000 48999 6
Deletion Chr11 21958596 21958598 2
Deletion Chr12 22717639 22717641 2
Deletion Chr3 24463911 24463912 1
Deletion Chr4 27194820 27194829 9
Deletion Chr2 35568826 35568844 18

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 16037036 16037039 2
Insertion Chr2 7480780 7480783 2
Insertion Chr8 12577488 12577493 4
Insertion Chr9 20216932 20216935 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 3269982 3403017
Inversion Chr5 3269983 3403016
Inversion Chr6 19751246 20311821
Inversion Chr12 21544375 21697830
Inversion Chr12 21544381 21697980

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 10054082 Chr6 20124466 OsKitaake06g180400
Translocation Chr8 19751075 Chr3 13932267 OsKitaake03g183500
Translocation Chr6 19751244 Chr4 29110062 OsKitaake04g220200
Translocation Chr6 20311819 Chr4 29109946 OsKitaake04g220200
Translocation Chr12 24795638 Chr1 21113501 OsKitaake12g201132
Translocation Chr12 24795639 Chr1 21112368 OsKitaake12g201132

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20240807	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g199200
SBS	Chr1	22694136	C-T	Homo	INTERGENIC
SBS	Chr1	24035268	G-A	Hetero	INTERGENIC
SBS	Chr1	27503149	C-T	Hetero	INTERGENIC
SBS	Chr1	32523096	G-A	Hetero	INTERGENIC
SBS	Chr1	37802518	A-T	Hetero	INTERGENIC
SBS	Chr2	10568723	T-C	Homo	INTERGENIC
SBS	Chr2	18837823	C-T	Homo	INTERGENIC
SBS	Chr3	2111801	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g030400
SBS	Chr3	12828694	C-T	Homo	INTRON
SBS	Chr3	18330513	T-A	Hetero	INTERGENIC
SBS	Chr4	24025557	A-G	Homo	INTERGENIC
SBS	Chr5	3074232	T-A	Hetero	UTR_5_PRIME
SBS	Chr5	3201808	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	23215688	T-C	Homo	SPLICE_SITE_REGION
SBS	Chr5	25851838	A-T	Hetero	INTERGENIC
SBS	Chr5	29265789	A-G	Homo	INTERGENIC
SBS	Chr7	6029048	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	9029034	A-G	Hetero	INTERGENIC
SBS	Chr7	19960293	C-T	Homo	INTERGENIC
SBS	Chr7	22463188	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g190600
SBS	Chr7	22463189	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g190600
SBS	Chr8	22489046	T-A	Hetero	INTRON
SBS	Chr9	12228558	G-A	Hetero	INTERGENIC
SBS	Chr10	14999915	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g094000
SBS	Chr10	23840590	T-A	Homo	INTERGENIC
SBS	Chr11	2526848	A-G	Hetero	INTERGENIC
SBS	Chr11	4952200	C-T	Hetero	INTERGENIC
SBS	Chr11	20642510	C-T	Hetero	INTERGENIC
SBS	Chr12	5093362	G-C	Hetero	INTERGENIC
SBS	Chr12	14487566	T-A	Hetero	INTERGENIC
SBS	Chr12	21439511	C-A	Hetero	INTERGENIC
SBS	Chr12	21548375	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	900119	900121	2
Deletion	Chr11	3015276	3015277	1
Deletion	Chr12	4932001	4939000	6999
Deletion	Chr4	9866296	9866317	21
Deletion	Chr5	12460042	12460067	25
Deletion	Chr3	15332463	15332464	1
Deletion	Chr5	15833728	15833740	12
Deletion	Chr10	18179792	18179796	4
Deletion	Chr4	19923759	19923760	1
Deletion	Chr3	20210010	20210011	1
Deletion	Chr12	21936001	21985000	48999	6
Deletion	Chr11	21958596	21958598	2
Deletion	Chr12	22717639	22717641	2
Deletion	Chr3	24463911	24463912	1
Deletion	Chr4	27194820	27194829	9
Deletion	Chr2	35568826	35568844	18

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3269982	3403017
Inversion	Chr5	3269983	3403016
Inversion	Chr6	19751246	20311821
Inversion	Chr12	21544375	21697830
Inversion	Chr12	21544381	21697980

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes