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| Mutant Information |
|---|
| Mutant Name | FN406-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN406-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 16170509 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16170510 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 29202787 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3385625 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 18690691 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 19223748 | C-A | Hetero | INTRON | |
| SBS | Chr2 | 19752443 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 21987107 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 9556663 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 7028056 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 1022410 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 8544258 | T-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 8545307 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15025348 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 24921401 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 4469031 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 18472931 | A-G | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 26343046 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 29462455 | C-T | Homo | INTRON | |
| SBS | Chr8 | 5960723 | G-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 9577983 | T-C | Hetero | INTRON | |
| SBS | Chr9 | 15613192 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr10 | 6728350 | A-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 9100375 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8148867 | T-C | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 8419364 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 11825041 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 17516683 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 11915710 | A-C | Homo | UTR_3_PRIME |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 560354 | 560355 | 1 | |
| Deletion | Chr7 | 704969 | 704971 | 2 | |
| Deletion | Chr8 | 1273001 | 1355000 | 81999 | 6 |
| Deletion | Chr6 | 2804376 | 2804378 | 2 | |
| Deletion | Chr10 | 4146503 | 4146504 | 1 | |
| Deletion | Chr2 | 10728001 | 10751000 | 22999 | |
| Deletion | Chr12 | 10879727 | 10879731 | 4 | |
| Deletion | Chr2 | 12299458 | 12299460 | 2 | |
| Deletion | Chr2 | 14747241 | 14747243 | 2 | |
| Deletion | Chr11 | 23173815 | 23173817 | 2 | |
| Deletion | Chr12 | 23333392 | 23333397 | 5 | |
| Deletion | Chr4 | 23585001 | 23634000 | 48999 | 10 |
| Deletion | Chr6 | 24414061 | 24414074 | 13 | |
| Deletion | Chr1 | 41380439 | 41380440 | 1 | OsKitaake01g451900 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 43985976 | 43985979 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 5660180 | 6007711 | 2 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 1292077 | Chr8 | 6147853 | |
| Translocation | Chr11 | 1292080 | Chr8 | 6142920 | |
| Translocation | Chr2 | 5660178 | Chr1 | 16658066 | OsKitaake02g078200 |
| Translocation | Chr2 | 6007712 | Chr1 | 16657377 | OsKitaake02g082300 |
| Translocation | Chr8 | 6142913 | Chr1 | 16658233 |