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Mutant Information

Mutant Name	FN4063-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4063-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20160072 C-T Hetero INTERGENIC
SBS Chr1 22186929 C-T Hetero INTERGENIC
SBS Chr1 33228407 G-T Homo UTR_5_PRIME
SBS Chr2 9862515 A-G Hetero INTERGENIC
SBS Chr2 9925905 A-G Hetero INTERGENIC
SBS Chr2 35896825 C-T Hetero INTRON
SBS Chr3 161370 G-C Homo INTERGENIC
SBS Chr3 17254449 G-A Hetero INTERGENIC
SBS Chr3 26003494 A-G Hetero INTERGENIC
SBS Chr3 31363117 T-C Homo INTERGENIC
SBS Chr3 32848757 T-C Homo NON_SYNONYMOUS_CODING OsKitaake03g349100
SBS Chr4 6977864 G-A Homo INTERGENIC
SBS Chr4 26365751 C-T Homo INTERGENIC
SBS Chr4 33063751 T-A Homo INTERGENIC
SBS Chr5 12152179 C-T Homo INTERGENIC
SBS Chr5 27028864 C-T Homo INTERGENIC
SBS Chr6 1849781 T-A Hetero INTERGENIC
SBS Chr6 3607614 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g050200
SBS Chr6 23264624 A-T Homo INTERGENIC
SBS Chr6 29495560 G-T Hetero INTERGENIC
SBS Chr7 11548312 T-A Homo INTERGENIC
SBS Chr7 24701584 A-T Hetero INTERGENIC
SBS Chr8 24334016 C-A Hetero INTERGENIC
SBS Chr8 25411430 G-A Hetero UTR_5_PRIME
SBS Chr9 3986787 G-A Hetero SYNONYMOUS_CODING
SBS Chr9 5613852 G-C Hetero INTERGENIC
SBS Chr9 11040112 C-A Hetero INTRON
SBS Chr9 17893696 C-T Hetero INTERGENIC
SBS Chr10 1278946 A-G Hetero INTERGENIC
SBS Chr10 1366313 G-A Hetero INTERGENIC
SBS Chr10 8314458 G-A Homo INTERGENIC
SBS Chr11 723288 C-T Homo INTERGENIC
SBS Chr11 27028494 G-A Homo INTERGENIC
SBS Chr12 1508252 C-T Hetero INTERGENIC
SBS Chr12 19936116 C-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1913807 1913816 9
Deletion Chr12 3462884 3462886 2
Deletion Chr6 3476852 3476859 7 OsKitaake06g048500
Deletion Chr8 3686268 3686271 3
Deletion Chr1 6658418 6658419 1
Deletion Chr4 7408001 7580000 171999 3
Deletion Chr4 7590001 7715000 124999 12
Deletion Chr1 12408001 12432000 23999 OsKitaake01g150000
Deletion Chr1 12439001 12496000 56999 7
Deletion Chr5 16549702 16549704 2
Deletion Chr12 19963182 19963186 4
Deletion Chr4 21609175 21609182 7 OsKitaake04g122200
Deletion Chr11 24916307 24916308 1
Deletion Chr1 26000645 26000647 2 OsKitaake01g252800
Deletion Chr5 28518848 28518871 23
Deletion Chr2 31722207 31722208 1
Deletion Chr4 36394225 36394256 31

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 33692353 33692356 2
Insertion Chr3 24026389 24026393 3
Insertion Chr3 30162340 30162343 2
Insertion Chr6 12620554 12620557 2
Insertion Chr9 13042713 13042716 2
Insertion Chr10 4599028 4599031 2
Insertion Chr12 26779716 26779719 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 512519 938716 OsKitaake07g005500

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 3782639 Chr1 12408903 OsKitaake06g052400
Translocation Chr6 3782655 Chr1 12408188 OsKitaake06g052400
Translocation Chr5 4901743 Chr1 41950157 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20160072	C-T	Hetero	INTERGENIC
SBS	Chr1	22186929	C-T	Hetero	INTERGENIC
SBS	Chr1	33228407	G-T	Homo	UTR_5_PRIME
SBS	Chr2	9862515	A-G	Hetero	INTERGENIC
SBS	Chr2	9925905	A-G	Hetero	INTERGENIC
SBS	Chr2	35896825	C-T	Hetero	INTRON
SBS	Chr3	161370	G-C	Homo	INTERGENIC
SBS	Chr3	17254449	G-A	Hetero	INTERGENIC
SBS	Chr3	26003494	A-G	Hetero	INTERGENIC
SBS	Chr3	31363117	T-C	Homo	INTERGENIC
SBS	Chr3	32848757	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g349100
SBS	Chr4	6977864	G-A	Homo	INTERGENIC
SBS	Chr4	26365751	C-T	Homo	INTERGENIC
SBS	Chr4	33063751	T-A	Homo	INTERGENIC
SBS	Chr5	12152179	C-T	Homo	INTERGENIC
SBS	Chr5	27028864	C-T	Homo	INTERGENIC
SBS	Chr6	1849781	T-A	Hetero	INTERGENIC
SBS	Chr6	3607614	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g050200
SBS	Chr6	23264624	A-T	Homo	INTERGENIC
SBS	Chr6	29495560	G-T	Hetero	INTERGENIC
SBS	Chr7	11548312	T-A	Homo	INTERGENIC
SBS	Chr7	24701584	A-T	Hetero	INTERGENIC
SBS	Chr8	24334016	C-A	Hetero	INTERGENIC
SBS	Chr8	25411430	G-A	Hetero	UTR_5_PRIME
SBS	Chr9	3986787	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr9	5613852	G-C	Hetero	INTERGENIC
SBS	Chr9	11040112	C-A	Hetero	INTRON
SBS	Chr9	17893696	C-T	Hetero	INTERGENIC
SBS	Chr10	1278946	A-G	Hetero	INTERGENIC
SBS	Chr10	1366313	G-A	Hetero	INTERGENIC
SBS	Chr10	8314458	G-A	Homo	INTERGENIC
SBS	Chr11	723288	C-T	Homo	INTERGENIC
SBS	Chr11	27028494	G-A	Homo	INTERGENIC
SBS	Chr12	1508252	C-T	Hetero	INTERGENIC
SBS	Chr12	19936116	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1913807	1913816	9
Deletion	Chr12	3462884	3462886	2
Deletion	Chr6	3476852	3476859	7	OsKitaake06g048500
Deletion	Chr8	3686268	3686271	3
Deletion	Chr1	6658418	6658419	1
Deletion	Chr4	7408001	7580000	171999	3
Deletion	Chr4	7590001	7715000	124999	12
Deletion	Chr1	12408001	12432000	23999	OsKitaake01g150000
Deletion	Chr1	12439001	12496000	56999	7
Deletion	Chr5	16549702	16549704	2
Deletion	Chr12	19963182	19963186	4
Deletion	Chr4	21609175	21609182	7	OsKitaake04g122200
Deletion	Chr11	24916307	24916308	1
Deletion	Chr1	26000645	26000647	2	OsKitaake01g252800
Deletion	Chr5	28518848	28518871	23
Deletion	Chr2	31722207	31722208	1
Deletion	Chr4	36394225	36394256	31

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	512519	938716	OsKitaake07g005500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes