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Mutant Information

Mutant Name	FN4064-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4064-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2697507 C-A Homo INTRON
SBS Chr1 13318238 G-A Homo INTERGENIC
SBS Chr1 30126499 T-C Hetero INTRON
SBS Chr1 38971872 C-T Homo INTERGENIC
SBS Chr2 18695150 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 37672715 A-G Homo SYNONYMOUS_CODING
SBS Chr4 11291251 T-A Hetero INTERGENIC
SBS Chr5 9175066 G-T Homo INTERGENIC
SBS Chr5 19229274 C-T Homo INTERGENIC
SBS Chr5 19229275 T-C Homo INTERGENIC
SBS Chr5 24946010 C-G Hetero INTERGENIC
SBS Chr5 25514508 G-T Hetero INTERGENIC
SBS Chr6 965191 T-C Homo INTRON
SBS Chr6 2466160 C-T Homo INTERGENIC
SBS Chr6 14570046 T-A Homo UTR_5_PRIME
SBS Chr6 14570047 T-A Homo UTR_5_PRIME
SBS Chr6 15450862 G-C Hetero INTERGENIC
SBS Chr6 25100851 G-T Homo NON_SYNONYMOUS_CODING OsKitaake06g222400
SBS Chr7 2336156 C-T Hetero INTERGENIC
SBS Chr7 2336158 G-A Hetero INTERGENIC
SBS Chr8 10644342 C-A Homo INTERGENIC
SBS Chr9 8828372 A-G Hetero INTERGENIC
SBS Chr9 10802357 G-A Hetero INTERGENIC
SBS Chr9 13908679 C-T Hetero INTERGENIC
SBS Chr9 15258950 G-A Hetero INTRON
SBS Chr9 16555461 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g120900
SBS Chr11 6758307 G-A Homo INTERGENIC
SBS Chr11 15268209 A-G Hetero INTERGENIC
SBS Chr11 15378761 G-A Hetero INTERGENIC
SBS Chr12 7804258 A-T Hetero INTERGENIC
SBS Chr12 12637048 T-C Hetero INTERGENIC
SBS Chr12 21753301 G-A Homo INTERGENIC
SBS Chr12 26125356 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2743001 2811000 67999 8
Deletion Chr6 2891256 2891259 3
Deletion Chr4 6373001 6416000 42999 4
Deletion Chr8 11072127 11072128 1
Deletion Chr6 14166616 14166619 3
Deletion Chr7 24550921 24550923 2 OsKitaake07g218700
Deletion Chr12 26850001 26911000 60999 13
Deletion Chr1 36254122 36254135 13 OsKitaake01g384600
Deletion Chr3 37678576 37678578 2 OsKitaake03g423300
Deletion Chr1 41199096 41199124 28

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 10972954 10972957 2
Insertion Chr3 13053394 13053399 4
Insertion Chr6 5565741 5565744 2
Insertion Chr11 18733448 18733451 2
Insertion Chr11 11247494 11247519 24

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 3314958 Chr5 28269607 OsKitaake05g262600
Translocation Chr7 3314963 Chr5 28270390 OsKitaake05g262600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2697507	C-A	Homo	INTRON
SBS	Chr1	13318238	G-A	Homo	INTERGENIC
SBS	Chr1	30126499	T-C	Hetero	INTRON
SBS	Chr1	38971872	C-T	Homo	INTERGENIC
SBS	Chr2	18695150	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	37672715	A-G	Homo	SYNONYMOUS_CODING
SBS	Chr4	11291251	T-A	Hetero	INTERGENIC
SBS	Chr5	9175066	G-T	Homo	INTERGENIC
SBS	Chr5	19229274	C-T	Homo	INTERGENIC
SBS	Chr5	19229275	T-C	Homo	INTERGENIC
SBS	Chr5	24946010	C-G	Hetero	INTERGENIC
SBS	Chr5	25514508	G-T	Hetero	INTERGENIC
SBS	Chr6	965191	T-C	Homo	INTRON
SBS	Chr6	2466160	C-T	Homo	INTERGENIC
SBS	Chr6	14570046	T-A	Homo	UTR_5_PRIME
SBS	Chr6	14570047	T-A	Homo	UTR_5_PRIME
SBS	Chr6	15450862	G-C	Hetero	INTERGENIC
SBS	Chr6	25100851	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g222400
SBS	Chr7	2336156	C-T	Hetero	INTERGENIC
SBS	Chr7	2336158	G-A	Hetero	INTERGENIC
SBS	Chr8	10644342	C-A	Homo	INTERGENIC
SBS	Chr9	8828372	A-G	Hetero	INTERGENIC
SBS	Chr9	10802357	G-A	Hetero	INTERGENIC
SBS	Chr9	13908679	C-T	Hetero	INTERGENIC
SBS	Chr9	15258950	G-A	Hetero	INTRON
SBS	Chr9	16555461	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g120900
SBS	Chr11	6758307	G-A	Homo	INTERGENIC
SBS	Chr11	15268209	A-G	Hetero	INTERGENIC
SBS	Chr11	15378761	G-A	Hetero	INTERGENIC
SBS	Chr12	7804258	A-T	Hetero	INTERGENIC
SBS	Chr12	12637048	T-C	Hetero	INTERGENIC
SBS	Chr12	21753301	G-A	Homo	INTERGENIC
SBS	Chr12	26125356	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2743001	2811000	67999	8
Deletion	Chr6	2891256	2891259	3
Deletion	Chr4	6373001	6416000	42999	4
Deletion	Chr8	11072127	11072128	1
Deletion	Chr6	14166616	14166619	3
Deletion	Chr7	24550921	24550923	2	OsKitaake07g218700
Deletion	Chr12	26850001	26911000	60999	13
Deletion	Chr1	36254122	36254135	13	OsKitaake01g384600
Deletion	Chr3	37678576	37678578	2	OsKitaake03g423300
Deletion	Chr1	41199096	41199124	28

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	3314958	Chr5	28269607	OsKitaake05g262600
Translocation	Chr7	3314963	Chr5	28270390	OsKitaake05g262600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes