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Mutant Information

Mutant Name	FN4065-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4065-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 8838053 G-A Homo INTRON
SBS Chr2 8838054 T-A Homo INTRON
SBS Chr2 12449114 G-A Homo INTERGENIC
SBS Chr2 20170546 C-A Hetero INTERGENIC
SBS Chr2 22556866 G-A Hetero INTERGENIC
SBS Chr3 7623433 T-C Hetero INTRON
SBS Chr3 19482932 A-C Hetero INTERGENIC
SBS Chr3 31037150 C-T Hetero INTRON
SBS Chr4 2330174 C-T Homo INTERGENIC
SBS Chr4 9035806 C-A Hetero INTERGENIC
SBS Chr4 10913555 G-T Hetero INTERGENIC
SBS Chr4 30287063 G-A Hetero INTERGENIC
SBS Chr4 34121433 C-T Hetero INTERGENIC
SBS Chr5 976417 A-T Hetero INTERGENIC
SBS Chr5 17300480 G-A Homo INTERGENIC
SBS Chr6 2806514 A-G Homo INTRON
SBS Chr6 20726177 C-A Hetero INTERGENIC
SBS Chr7 10877354 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g103000
SBS Chr9 19907043 T-C Hetero INTERGENIC
SBS Chr9 20819081 C-T Hetero INTERGENIC
SBS Chr9 21608531 G-T Hetero INTERGENIC
SBS Chr9 21608532 T-A Hetero INTERGENIC
SBS Chr12 6908387 G-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3085909 3085912 3
Deletion Chr1 9539001 9618000 78999 12
Deletion Chr6 9645189 9645201 12
Deletion Chr1 16568205 16568206 1
Deletion Chr8 21943133 21943137 4
Deletion Chr3 24057896 24057899 3
Deletion Chr11 24342192 24342230 38
Deletion Chr3 25476177 25476178 1
Deletion Chr5 25817177 25817178 1
Deletion Chr12 25899502 25899504 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 22300058 22300061 2
Insertion Chr12 9120657 9120660 2
Insertion Chr12 26506519 26506522 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 37789569 Chr1 10058836 2
Translocation Chr3 37789787 Chr1 10058836 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	8838053	G-A	Homo	INTRON
SBS	Chr2	8838054	T-A	Homo	INTRON
SBS	Chr2	12449114	G-A	Homo	INTERGENIC
SBS	Chr2	20170546	C-A	Hetero	INTERGENIC
SBS	Chr2	22556866	G-A	Hetero	INTERGENIC
SBS	Chr3	7623433	T-C	Hetero	INTRON
SBS	Chr3	19482932	A-C	Hetero	INTERGENIC
SBS	Chr3	31037150	C-T	Hetero	INTRON
SBS	Chr4	2330174	C-T	Homo	INTERGENIC
SBS	Chr4	9035806	C-A	Hetero	INTERGENIC
SBS	Chr4	10913555	G-T	Hetero	INTERGENIC
SBS	Chr4	30287063	G-A	Hetero	INTERGENIC
SBS	Chr4	34121433	C-T	Hetero	INTERGENIC
SBS	Chr5	976417	A-T	Hetero	INTERGENIC
SBS	Chr5	17300480	G-A	Homo	INTERGENIC
SBS	Chr6	2806514	A-G	Homo	INTRON
SBS	Chr6	20726177	C-A	Hetero	INTERGENIC
SBS	Chr7	10877354	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g103000
SBS	Chr9	19907043	T-C	Hetero	INTERGENIC
SBS	Chr9	20819081	C-T	Hetero	INTERGENIC
SBS	Chr9	21608531	G-T	Hetero	INTERGENIC
SBS	Chr9	21608532	T-A	Hetero	INTERGENIC
SBS	Chr12	6908387	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3085909	3085912	3
Deletion	Chr1	9539001	9618000	78999	12
Deletion	Chr6	9645189	9645201	12
Deletion	Chr1	16568205	16568206	1
Deletion	Chr8	21943133	21943137	4
Deletion	Chr3	24057896	24057899	3
Deletion	Chr11	24342192	24342230	38
Deletion	Chr3	25476177	25476178	1
Deletion	Chr5	25817177	25817178	1
Deletion	Chr12	25899502	25899504	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	37789569	Chr1	10058836	2
Translocation	Chr3	37789787	Chr1	10058836	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes