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Mutant Information

Mutant Name	FN4066-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4066-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21980311 G-A Homo INTERGENIC
SBS Chr1 31143405 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g310800
SBS Chr1 33206759 G-A Hetero UTR_3_PRIME
SBS Chr1 44210894 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g493900
SBS Chr2 17715200 C-T Homo INTERGENIC
SBS Chr2 20736100 T-C Hetero INTERGENIC
SBS Chr2 34342399 T-C Hetero INTERGENIC
SBS Chr2 34342406 A-G Hetero INTERGENIC
SBS Chr3 11539839 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g156900
SBS Chr3 18166254 G-A Hetero INTERGENIC
SBS Chr4 11410655 C-T Hetero INTERGENIC
SBS Chr7 16317708 T-G Hetero INTERGENIC
SBS Chr7 20036155 C-T Hetero INTERGENIC
SBS Chr8 10467981 C-T Hetero INTERGENIC
SBS Chr9 11867444 C-T Hetero INTERGENIC
SBS Chr9 19882799 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g165400
SBS Chr10 20032293 A-C Hetero INTRON
SBS Chr11 3300481 A-T Homo INTERGENIC
SBS Chr11 3300482 C-T Homo INTERGENIC
SBS Chr11 16741644 C-T Hetero INTERGENIC
SBS Chr12 4282467 G-C Hetero UTR_3_PRIME
SBS Chr12 5586631 A-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 773648 773661 13
Deletion Chr11 3300540 3300569 29
Deletion Chr4 3876001 4544000 667999 31
Deletion Chr1 4198990 4198992 2
Deletion Chr1 10020431 10020434 3
Deletion Chr3 13331827 13331840 13
Deletion Chr2 14352915 14352925 10
Deletion Chr8 15496210 15496218 8
Deletion Chr6 23178110 23178111 1
Deletion Chr3 36811185 36811193 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 12856396 12856399 2
Insertion Chr3 3635584 3635587 2
Insertion Chr3 22268486 22268489 2
Insertion Chr12 17675098 17675100 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 3238555 3407712
Inversion Chr5 3238560 3407720
Inversion Chr10 4987386 5340826

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21980311	G-A	Homo	INTERGENIC
SBS	Chr1	31143405	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g310800
SBS	Chr1	33206759	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	44210894	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g493900
SBS	Chr2	17715200	C-T	Homo	INTERGENIC
SBS	Chr2	20736100	T-C	Hetero	INTERGENIC
SBS	Chr2	34342399	T-C	Hetero	INTERGENIC
SBS	Chr2	34342406	A-G	Hetero	INTERGENIC
SBS	Chr3	11539839	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g156900
SBS	Chr3	18166254	G-A	Hetero	INTERGENIC
SBS	Chr4	11410655	C-T	Hetero	INTERGENIC
SBS	Chr7	16317708	T-G	Hetero	INTERGENIC
SBS	Chr7	20036155	C-T	Hetero	INTERGENIC
SBS	Chr8	10467981	C-T	Hetero	INTERGENIC
SBS	Chr9	11867444	C-T	Hetero	INTERGENIC
SBS	Chr9	19882799	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g165400
SBS	Chr10	20032293	A-C	Hetero	INTRON
SBS	Chr11	3300481	A-T	Homo	INTERGENIC
SBS	Chr11	3300482	C-T	Homo	INTERGENIC
SBS	Chr11	16741644	C-T	Hetero	INTERGENIC
SBS	Chr12	4282467	G-C	Hetero	UTR_3_PRIME
SBS	Chr12	5586631	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	773648	773661	13
Deletion	Chr11	3300540	3300569	29
Deletion	Chr4	3876001	4544000	667999	31
Deletion	Chr1	4198990	4198992	2
Deletion	Chr1	10020431	10020434	3
Deletion	Chr3	13331827	13331840	13
Deletion	Chr2	14352915	14352925	10
Deletion	Chr8	15496210	15496218	8
Deletion	Chr6	23178110	23178111	1
Deletion	Chr3	36811185	36811193	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3238555	3407712
Inversion	Chr5	3238560	3407720
Inversion	Chr10	4987386	5340826

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes