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Mutant Information

Mutant Name	FN4068-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4068-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 23487894 A-G Hetero INTERGENIC
SBS Chr2 20220972 C-T Homo INTERGENIC
SBS Chr3 29028425 T-A Hetero INTERGENIC
SBS Chr3 33621528 T-A Hetero INTERGENIC
SBS Chr4 7838359 G-T Hetero INTERGENIC
SBS Chr4 13741239 C-A Hetero INTERGENIC
SBS Chr4 15377635 G-A Hetero INTERGENIC
SBS Chr4 18493470 G-A Homo INTERGENIC
SBS Chr4 22279233 G-A Hetero INTERGENIC
SBS Chr5 10304030 G-C Hetero INTERGENIC
SBS Chr6 18490983 A-G Homo NON_SYNONYMOUS_CODING OsKitaake06g169103
SBS Chr6 18490988 C-T Homo NON_SYNONYMOUS_CODING OsKitaake06g169103
SBS Chr6 19599821 G-A Hetero INTERGENIC
SBS Chr9 14958179 C-T Hetero INTERGENIC
SBS Chr10 21326956 C-T Hetero INTERGENIC
SBS Chr11 9302467 C-T Hetero INTERGENIC
SBS Chr11 14672486 T-G Hetero INTERGENIC
SBS Chr11 26220783 T-A Hetero INTERGENIC
SBS Chr12 13482070 G-A Hetero INTRON
SBS Chr12 26179745 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2298622 2298623 1
Deletion Chr3 4182115 4182154 39
Deletion Chr9 8230868 8230874 6
Deletion Chr9 14589373 14589377 4
Deletion Chr5 16197493 16197496 3
Deletion Chr11 17016165 17016167 2
Deletion Chr11 18791735 18791736 1
Deletion Chr6 20230074 20230077 3
Deletion Chr10 21004918 21004922 4
Deletion Chr1 22167076 22167081 5
Deletion Chr4 22809580 22809603 23
Deletion Chr7 23161624 23161625 1
Deletion Chr3 23426889 23426895 6
Deletion Chr7 25048734 25048736 2
Deletion Chr11 25536050 25536054 4
Deletion Chr1 40707194 40707242 48 OsKitaake01g442700

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 16647037 16647040 2
Insertion Chr12 3436186 3436189 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23487894	A-G	Hetero	INTERGENIC
SBS	Chr2	20220972	C-T	Homo	INTERGENIC
SBS	Chr3	29028425	T-A	Hetero	INTERGENIC
SBS	Chr3	33621528	T-A	Hetero	INTERGENIC
SBS	Chr4	7838359	G-T	Hetero	INTERGENIC
SBS	Chr4	13741239	C-A	Hetero	INTERGENIC
SBS	Chr4	15377635	G-A	Hetero	INTERGENIC
SBS	Chr4	18493470	G-A	Homo	INTERGENIC
SBS	Chr4	22279233	G-A	Hetero	INTERGENIC
SBS	Chr5	10304030	G-C	Hetero	INTERGENIC
SBS	Chr6	18490983	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g169103
SBS	Chr6	18490988	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake06g169103
SBS	Chr6	19599821	G-A	Hetero	INTERGENIC
SBS	Chr9	14958179	C-T	Hetero	INTERGENIC
SBS	Chr10	21326956	C-T	Hetero	INTERGENIC
SBS	Chr11	9302467	C-T	Hetero	INTERGENIC
SBS	Chr11	14672486	T-G	Hetero	INTERGENIC
SBS	Chr11	26220783	T-A	Hetero	INTERGENIC
SBS	Chr12	13482070	G-A	Hetero	INTRON
SBS	Chr12	26179745	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2298622	2298623	1
Deletion	Chr3	4182115	4182154	39
Deletion	Chr9	8230868	8230874	6
Deletion	Chr9	14589373	14589377	4
Deletion	Chr5	16197493	16197496	3
Deletion	Chr11	17016165	17016167	2
Deletion	Chr11	18791735	18791736	1
Deletion	Chr6	20230074	20230077	3
Deletion	Chr10	21004918	21004922	4
Deletion	Chr1	22167076	22167081	5
Deletion	Chr4	22809580	22809603	23
Deletion	Chr7	23161624	23161625	1
Deletion	Chr3	23426889	23426895	6
Deletion	Chr7	25048734	25048736	2
Deletion	Chr11	25536050	25536054	4
Deletion	Chr1	40707194	40707242	48	OsKitaake01g442700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes