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Mutant Information

Mutant Name	FN4069-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4069-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18283198 A-T Hetero INTERGENIC
SBS Chr1 18429499 A-G Hetero INTERGENIC
SBS Chr1 21287231 A-G Hetero INTERGENIC
SBS Chr1 24026184 G-A Hetero INTERGENIC
SBS Chr2 17045446 C-T Hetero INTERGENIC
SBS Chr2 17059569 G-A Hetero INTERGENIC
SBS Chr2 28318264 A-C Hetero INTERGENIC
SBS Chr2 32112069 C-T Hetero INTERGENIC
SBS Chr3 2191112 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g031300
SBS Chr3 19318665 A-T Homo INTERGENIC
SBS Chr4 30512 G-T Hetero INTERGENIC
SBS Chr4 6550963 C-T Hetero INTERGENIC
SBS Chr4 21238964 C-T Homo INTERGENIC
SBS Chr4 21916381 C-T Hetero INTERGENIC
SBS Chr4 26307791 A-C Hetero INTRON
SBS Chr4 29335160 T-A Hetero INTERGENIC
SBS Chr4 32415237 A-T Hetero INTERGENIC
SBS Chr5 19923228 T-G Homo INTERGENIC
SBS Chr5 23283718 C-T Homo INTERGENIC
SBS Chr6 4127696 C-A Homo INTERGENIC
SBS Chr6 7100758 C-T Hetero INTERGENIC
SBS Chr6 19299604 G-A Hetero INTERGENIC
SBS Chr6 20672400 C-A Hetero INTERGENIC
SBS Chr6 25612584 A-T Hetero INTERGENIC
SBS Chr8 7466207 C-A Hetero INTERGENIC
SBS Chr8 8256450 C-T Hetero INTERGENIC
SBS Chr8 9401287 C-T Hetero INTERGENIC
SBS Chr8 10854383 G-A Hetero INTERGENIC
SBS Chr8 19404422 C-T Hetero INTERGENIC
SBS Chr9 5194478 C-T Hetero INTERGENIC
SBS Chr9 13578132 A-G Hetero INTRON
SBS Chr9 22211797 A-T Hetero INTERGENIC
SBS Chr10 7072402 A-T Homo INTERGENIC
SBS Chr10 8516845 C-T Homo INTRON
SBS Chr11 723288 C-T Homo INTERGENIC
SBS Chr11 19411786 G-A Hetero INTERGENIC
SBS Chr11 19981428 A-C Hetero INTERGENIC
SBS Chr11 23230281 A-T Hetero INTERGENIC
SBS Chr11 25508804 A-G Hetero INTERGENIC
SBS Chr12 8583282 G-T Homo INTERGENIC

Deletions: 32

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 765537 765542 5
Deletion Chr12 1356176 1356183 7
Deletion Chr2 1485556 1485564 8 OsKitaake02g023500
Deletion Chr10 2191914 2191917 3
Deletion Chr2 2439482 2439484 2 OsKitaake02g035200
Deletion Chr8 3380001 3388000 7999
Deletion Chr1 4703122 4703137 15
Deletion Chr8 4821527 4821540 13
Deletion Chr5 5297162 5297167 5
Deletion Chr12 7686193 7686194 1
Deletion Chr8 11019237 11019242 5
Deletion Chr8 11211393 11211405 12
Deletion Chr3 11849090 11849096 6 OsKitaake03g161301
Deletion Chr8 11880659 11880664 5
Deletion Chr2 11908118 11908127 9
Deletion Chr9 12899254 12899261 7
Deletion Chr11 13340696 13340703 7
Deletion Chr8 14591818 14591823 5
Deletion Chr6 15096601 15096606 5
Deletion Chr6 17254957 17254960 3
Deletion Chr1 17454334 17454344 10
Deletion Chr9 17526336 17526341 5
Deletion Chr2 18938809 18938819 10
Deletion Chr9 19614589 19614590 1
Deletion Chr1 21501239 21501255 16
Deletion Chr4 21619638 21619640 2
Deletion Chr11 22681374 22681379 5
Deletion Chr2 23267785 23267787 2
Deletion Chr6 24645132 24645134 2 OsKitaake06g218500
Deletion Chr2 24959443 24959444 1
Deletion Chr12 26902951 26902962 11 OsKitaake12g224900
Deletion Chr1 31293614 31293644 30

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 24495009 24495012 2
Insertion Chr4 3977504 3977507 2
Insertion Chr12 1677486 1677490 3
Insertion Chr12 10563642 10563650 7

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 2146347 2516855
Inversion Chr7 2146352 2516846

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18283198	A-T	Hetero	INTERGENIC
SBS	Chr1	18429499	A-G	Hetero	INTERGENIC
SBS	Chr1	21287231	A-G	Hetero	INTERGENIC
SBS	Chr1	24026184	G-A	Hetero	INTERGENIC
SBS	Chr2	17045446	C-T	Hetero	INTERGENIC
SBS	Chr2	17059569	G-A	Hetero	INTERGENIC
SBS	Chr2	28318264	A-C	Hetero	INTERGENIC
SBS	Chr2	32112069	C-T	Hetero	INTERGENIC
SBS	Chr3	2191112	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g031300
SBS	Chr3	19318665	A-T	Homo	INTERGENIC
SBS	Chr4	30512	G-T	Hetero	INTERGENIC
SBS	Chr4	6550963	C-T	Hetero	INTERGENIC
SBS	Chr4	21238964	C-T	Homo	INTERGENIC
SBS	Chr4	21916381	C-T	Hetero	INTERGENIC
SBS	Chr4	26307791	A-C	Hetero	INTRON
SBS	Chr4	29335160	T-A	Hetero	INTERGENIC
SBS	Chr4	32415237	A-T	Hetero	INTERGENIC
SBS	Chr5	19923228	T-G	Homo	INTERGENIC
SBS	Chr5	23283718	C-T	Homo	INTERGENIC
SBS	Chr6	4127696	C-A	Homo	INTERGENIC
SBS	Chr6	7100758	C-T	Hetero	INTERGENIC
SBS	Chr6	19299604	G-A	Hetero	INTERGENIC
SBS	Chr6	20672400	C-A	Hetero	INTERGENIC
SBS	Chr6	25612584	A-T	Hetero	INTERGENIC
SBS	Chr8	7466207	C-A	Hetero	INTERGENIC
SBS	Chr8	8256450	C-T	Hetero	INTERGENIC
SBS	Chr8	9401287	C-T	Hetero	INTERGENIC
SBS	Chr8	10854383	G-A	Hetero	INTERGENIC
SBS	Chr8	19404422	C-T	Hetero	INTERGENIC
SBS	Chr9	5194478	C-T	Hetero	INTERGENIC
SBS	Chr9	13578132	A-G	Hetero	INTRON
SBS	Chr9	22211797	A-T	Hetero	INTERGENIC
SBS	Chr10	7072402	A-T	Homo	INTERGENIC
SBS	Chr10	8516845	C-T	Homo	INTRON
SBS	Chr11	723288	C-T	Homo	INTERGENIC
SBS	Chr11	19411786	G-A	Hetero	INTERGENIC
SBS	Chr11	19981428	A-C	Hetero	INTERGENIC
SBS	Chr11	23230281	A-T	Hetero	INTERGENIC
SBS	Chr11	25508804	A-G	Hetero	INTERGENIC
SBS	Chr12	8583282	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	765537	765542	5
Deletion	Chr12	1356176	1356183	7
Deletion	Chr2	1485556	1485564	8	OsKitaake02g023500
Deletion	Chr10	2191914	2191917	3
Deletion	Chr2	2439482	2439484	2	OsKitaake02g035200
Deletion	Chr8	3380001	3388000	7999
Deletion	Chr1	4703122	4703137	15
Deletion	Chr8	4821527	4821540	13
Deletion	Chr5	5297162	5297167	5
Deletion	Chr12	7686193	7686194	1
Deletion	Chr8	11019237	11019242	5
Deletion	Chr8	11211393	11211405	12
Deletion	Chr3	11849090	11849096	6	OsKitaake03g161301
Deletion	Chr8	11880659	11880664	5
Deletion	Chr2	11908118	11908127	9
Deletion	Chr9	12899254	12899261	7
Deletion	Chr11	13340696	13340703	7
Deletion	Chr8	14591818	14591823	5
Deletion	Chr6	15096601	15096606	5
Deletion	Chr6	17254957	17254960	3
Deletion	Chr1	17454334	17454344	10
Deletion	Chr9	17526336	17526341	5
Deletion	Chr2	18938809	18938819	10
Deletion	Chr9	19614589	19614590	1
Deletion	Chr1	21501239	21501255	16
Deletion	Chr4	21619638	21619640	2
Deletion	Chr11	22681374	22681379	5
Deletion	Chr2	23267785	23267787	2
Deletion	Chr6	24645132	24645134	2	OsKitaake06g218500
Deletion	Chr2	24959443	24959444	1
Deletion	Chr12	26902951	26902962	11	OsKitaake12g224900
Deletion	Chr1	31293614	31293644	30

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	2146347	2516855
Inversion	Chr7	2146352	2516846

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes