Search Kitaake

Mutant Information

Mutant Name	FN407-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN407-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 468290 T-G Hetero INTERGENIC
SBS Chr1 5387444 G-A Hetero INTRON
SBS Chr1 21943671 T-C Hetero INTERGENIC
SBS Chr2 31609551 T-C Homo INTERGENIC
SBS Chr2 32513301 C-T Hetero INTERGENIC
SBS Chr2 35704850 A-G Hetero SPLICE_SITE_ACCEPTOR OsKitaake02g375400
SBS Chr3 1835116 A-T Homo INTERGENIC
SBS Chr4 11922242 C-T Hetero INTERGENIC
SBS Chr4 16476661 G-A Hetero INTERGENIC
SBS Chr4 16476662 G-A Hetero INTERGENIC
SBS Chr4 17514396 T-A Hetero INTERGENIC
SBS Chr4 19064976 G-A Hetero INTERGENIC
SBS Chr5 4070409 G-T Homo INTERGENIC
SBS Chr5 20552770 T-C Hetero SYNONYMOUS_CODING
SBS Chr6 7537523 G-A Hetero INTERGENIC
SBS Chr6 11564966 C-T Hetero INTERGENIC
SBS Chr6 13386980 G-A Hetero INTERGENIC
SBS Chr6 17116922 C-T Hetero INTERGENIC
SBS Chr6 22260124 G-A Hetero INTRON
SBS Chr6 24205135 T-A Hetero INTERGENIC
SBS Chr7 8344003 G-A Hetero INTERGENIC
SBS Chr7 17291762 T-A Hetero INTERGENIC
SBS Chr8 215310 C-T Hetero INTRON
SBS Chr8 13707854 A-G Hetero INTERGENIC
SBS Chr9 6419809 C-T Hetero INTERGENIC
SBS Chr10 4132447 A-C Hetero UTR_3_PRIME
SBS Chr10 4375186 T-G Hetero INTERGENIC
SBS Chr11 6138077 G-T Homo SYNONYMOUS_CODING
SBS Chr11 12612500 T-G Homo INTERGENIC
SBS Chr11 22928850 A-T Hetero INTRON
SBS Chr11 23690457 G-A Hetero INTERGENIC
SBS Chr11 29430798 A-G Hetero INTERGENIC
SBS Chr12 14593812 A-T Hetero INTERGENIC
SBS Chr12 14888590 C-G Hetero INTERGENIC
SBS Chr12 26016345 A-T Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3116001 3125000 8999
Deletion Chr7 3919794 3919802 8
Deletion Chr9 3967813 3967822 9
Deletion Chr5 7147563 7147564 1
Deletion Chr2 7398713 7398714 1 OsKitaake02g098500
Deletion Chr3 7661631 7661635 4 OsKitaake03g106300
Deletion Chr11 11666576 11666586 10
Deletion Chr11 12613792 12613793 1
Deletion Chr11 13997595 13997599 4
Deletion Chr12 14589751 14589758 7
Deletion Chr2 15356866 15356870 4
Deletion Chr3 15911242 15911244 2
Deletion Chr1 17242104 17242106 2
Deletion Chr10 18791001 18862000 70999 3
Deletion Chr7 19497613 19497615 2
Deletion Chr6 22260102 22260113 11
Deletion Chr1 36764389 36764392 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 23509353 23509356 2
Insertion Chr3 1319996 1319999 2
Insertion Chr4 31133485 31133488 2
Insertion Chr9 18566506 18566509 2
Insertion Chr9 22636753 22636756 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 1927536 Chr5 20349741 OsKitaake11g026900
Translocation Chr11 3028429 Chr5 20349745
Translocation Chr10 4035301 Chr1 15315552
Translocation Chr10 4047278 Chr1 15315566

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	468290	T-G	Hetero	INTERGENIC
SBS	Chr1	5387444	G-A	Hetero	INTRON
SBS	Chr1	21943671	T-C	Hetero	INTERGENIC
SBS	Chr2	31609551	T-C	Homo	INTERGENIC
SBS	Chr2	32513301	C-T	Hetero	INTERGENIC
SBS	Chr2	35704850	A-G	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake02g375400
SBS	Chr3	1835116	A-T	Homo	INTERGENIC
SBS	Chr4	11922242	C-T	Hetero	INTERGENIC
SBS	Chr4	16476661	G-A	Hetero	INTERGENIC
SBS	Chr4	16476662	G-A	Hetero	INTERGENIC
SBS	Chr4	17514396	T-A	Hetero	INTERGENIC
SBS	Chr4	19064976	G-A	Hetero	INTERGENIC
SBS	Chr5	4070409	G-T	Homo	INTERGENIC
SBS	Chr5	20552770	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	7537523	G-A	Hetero	INTERGENIC
SBS	Chr6	11564966	C-T	Hetero	INTERGENIC
SBS	Chr6	13386980	G-A	Hetero	INTERGENIC
SBS	Chr6	17116922	C-T	Hetero	INTERGENIC
SBS	Chr6	22260124	G-A	Hetero	INTRON
SBS	Chr6	24205135	T-A	Hetero	INTERGENIC
SBS	Chr7	8344003	G-A	Hetero	INTERGENIC
SBS	Chr7	17291762	T-A	Hetero	INTERGENIC
SBS	Chr8	215310	C-T	Hetero	INTRON
SBS	Chr8	13707854	A-G	Hetero	INTERGENIC
SBS	Chr9	6419809	C-T	Hetero	INTERGENIC
SBS	Chr10	4132447	A-C	Hetero	UTR_3_PRIME
SBS	Chr10	4375186	T-G	Hetero	INTERGENIC
SBS	Chr11	6138077	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	12612500	T-G	Homo	INTERGENIC
SBS	Chr11	22928850	A-T	Hetero	INTRON
SBS	Chr11	23690457	G-A	Hetero	INTERGENIC
SBS	Chr11	29430798	A-G	Hetero	INTERGENIC
SBS	Chr12	14593812	A-T	Hetero	INTERGENIC
SBS	Chr12	14888590	C-G	Hetero	INTERGENIC
SBS	Chr12	26016345	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3116001	3125000	8999
Deletion	Chr7	3919794	3919802	8
Deletion	Chr9	3967813	3967822	9
Deletion	Chr5	7147563	7147564	1
Deletion	Chr2	7398713	7398714	1	OsKitaake02g098500
Deletion	Chr3	7661631	7661635	4	OsKitaake03g106300
Deletion	Chr11	11666576	11666586	10
Deletion	Chr11	12613792	12613793	1
Deletion	Chr11	13997595	13997599	4
Deletion	Chr12	14589751	14589758	7
Deletion	Chr2	15356866	15356870	4
Deletion	Chr3	15911242	15911244	2
Deletion	Chr1	17242104	17242106	2
Deletion	Chr10	18791001	18862000	70999	3
Deletion	Chr7	19497613	19497615	2
Deletion	Chr6	22260102	22260113	11
Deletion	Chr1	36764389	36764392	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1927536	Chr5	20349741	OsKitaake11g026900
Translocation	Chr11	3028429	Chr5	20349745
Translocation	Chr10	4035301	Chr1	15315552
Translocation	Chr10	4047278	Chr1	15315566

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes