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Mutant Information

Mutant Name	FN4070-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4070-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16738668 C-T Homo INTERGENIC
SBS Chr1 22134626 G-A Hetero INTERGENIC
SBS Chr1 29005222 G-A Hetero INTERGENIC
SBS Chr2 4360884 G-A Homo INTERGENIC
SBS Chr2 6305949 G-T Homo STOP_GAINED OsKitaake02g085400
SBS Chr2 20009683 A-G Hetero INTERGENIC
SBS Chr2 24095459 G-A Hetero INTERGENIC
SBS Chr2 35055309 T-A Homo INTERGENIC
SBS Chr3 31898348 T-A Hetero INTRON
SBS Chr5 12754121 A-G Homo INTERGENIC
SBS Chr5 22991889 A-T Homo INTERGENIC
SBS Chr6 29140869 C-T Homo INTRON
SBS Chr7 8636097 C-G Hetero INTERGENIC
SBS Chr7 8636098 A-G Hetero INTERGENIC
SBS Chr7 21932390 C-A Hetero INTRON
SBS Chr8 18191760 C-T Hetero INTERGENIC
SBS Chr8 19036284 G-C Hetero INTERGENIC
SBS Chr8 23278479 C-A Hetero INTERGENIC
SBS Chr9 716816 C-G Hetero INTERGENIC
SBS Chr9 748448 A-T Homo INTERGENIC
SBS Chr9 21691059 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake09g190800
SBS Chr10 14597641 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g091900
SBS Chr10 15388512 G-T Homo INTERGENIC
SBS Chr10 21441034 G-T Hetero INTERGENIC
SBS Chr10 21782103 G-C Hetero UTR_5_PRIME
SBS Chr10 23487086 C-T Hetero INTERGENIC
SBS Chr11 7442288 T-A Hetero INTERGENIC
SBS Chr11 8968180 C-A Homo INTERGENIC
SBS Chr11 19738596 A-T Homo INTERGENIC
SBS Chr11 23780660 A-T Hetero INTERGENIC
SBS Chr11 23797207 C-T Hetero INTERGENIC
SBS Chr12 26545866 C-T Homo INTERGENIC
SBS Chr12 26545867 T-C Homo INTERGENIC

Deletions: 35

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1003963 1003972 9
Deletion Chr11 3166057 3166083 26
Deletion Chr12 6117610 6117619 9
Deletion Chr3 8077435 8077436 1
Deletion Chr7 8636001 8755000 118999 7
Deletion Chr7 8764001 9171000 406999 25
Deletion Chr12 9251977 9251987 10
Deletion Chr8 10251092 10251094 2
Deletion Chr10 10305735 10305736 1
Deletion Chr9 10396853 10396857 4
Deletion Chr3 10889540 10889549 9
Deletion Chr3 11711857 11711863 6
Deletion Chr3 11806628 11806629 1
Deletion Chr10 12514064 12514065 1
Deletion Chr6 14239229 14239243 14
Deletion Chr3 15647105 15647109 4
Deletion Chr10 16218492 16218501 9
Deletion Chr10 18885131 18885132 1
Deletion Chr10 19523072 19523081 9 OsKitaake10g143500
Deletion Chr9 22187902 22187914 12
Deletion Chr5 22554888 22554896 8
Deletion Chr1 22901020 22901047 27
Deletion Chr8 24924250 24924255 5
Deletion Chr6 25800905 25800915 10
Deletion Chr1 26797256 26797293 37
Deletion Chr7 28023827 28023832 5 OsKitaake07g263501
Deletion Chr11 28198573 28198585 12
Deletion Chr11 28238063 28238073 10
Deletion Chr2 32985016 32985021 5
Deletion Chr1 34750959 34750960 1
Deletion Chr3 35776889 35776911 22
Deletion Chr4 35968803 35968816 13
Deletion Chr4 36685219 36685230 11
Deletion Chr1 38984286 38984287 1
Deletion Chr1 41148124 41148126 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 12088494 12088497 2
Insertion Chr12 3678728 3678730 1
Insertion Chr9 2740684 2740686 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 11440760 11445537 OsKitaake09g071000
Inversion Chr9 11440770 11445541 OsKitaake09g071000
Inversion Chr1 22590947 22899289 OsKitaake01g217900

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 12228008 Chr4 23818506 2
Translocation Chr8 12228716 Chr4 36350739 OsKitaake04g315500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16738668	C-T	Homo	INTERGENIC
SBS	Chr1	22134626	G-A	Hetero	INTERGENIC
SBS	Chr1	29005222	G-A	Hetero	INTERGENIC
SBS	Chr2	4360884	G-A	Homo	INTERGENIC
SBS	Chr2	6305949	G-T	Homo	STOP_GAINED	OsKitaake02g085400
SBS	Chr2	20009683	A-G	Hetero	INTERGENIC
SBS	Chr2	24095459	G-A	Hetero	INTERGENIC
SBS	Chr2	35055309	T-A	Homo	INTERGENIC
SBS	Chr3	31898348	T-A	Hetero	INTRON
SBS	Chr5	12754121	A-G	Homo	INTERGENIC
SBS	Chr5	22991889	A-T	Homo	INTERGENIC
SBS	Chr6	29140869	C-T	Homo	INTRON
SBS	Chr7	8636097	C-G	Hetero	INTERGENIC
SBS	Chr7	8636098	A-G	Hetero	INTERGENIC
SBS	Chr7	21932390	C-A	Hetero	INTRON
SBS	Chr8	18191760	C-T	Hetero	INTERGENIC
SBS	Chr8	19036284	G-C	Hetero	INTERGENIC
SBS	Chr8	23278479	C-A	Hetero	INTERGENIC
SBS	Chr9	716816	C-G	Hetero	INTERGENIC
SBS	Chr9	748448	A-T	Homo	INTERGENIC
SBS	Chr9	21691059	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g190800
SBS	Chr10	14597641	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g091900
SBS	Chr10	15388512	G-T	Homo	INTERGENIC
SBS	Chr10	21441034	G-T	Hetero	INTERGENIC
SBS	Chr10	21782103	G-C	Hetero	UTR_5_PRIME
SBS	Chr10	23487086	C-T	Hetero	INTERGENIC
SBS	Chr11	7442288	T-A	Hetero	INTERGENIC
SBS	Chr11	8968180	C-A	Homo	INTERGENIC
SBS	Chr11	19738596	A-T	Homo	INTERGENIC
SBS	Chr11	23780660	A-T	Hetero	INTERGENIC
SBS	Chr11	23797207	C-T	Hetero	INTERGENIC
SBS	Chr12	26545866	C-T	Homo	INTERGENIC
SBS	Chr12	26545867	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1003963	1003972	9
Deletion	Chr11	3166057	3166083	26
Deletion	Chr12	6117610	6117619	9
Deletion	Chr3	8077435	8077436	1
Deletion	Chr7	8636001	8755000	118999	7
Deletion	Chr7	8764001	9171000	406999	25
Deletion	Chr12	9251977	9251987	10
Deletion	Chr8	10251092	10251094	2
Deletion	Chr10	10305735	10305736	1
Deletion	Chr9	10396853	10396857	4
Deletion	Chr3	10889540	10889549	9
Deletion	Chr3	11711857	11711863	6
Deletion	Chr3	11806628	11806629	1
Deletion	Chr10	12514064	12514065	1
Deletion	Chr6	14239229	14239243	14
Deletion	Chr3	15647105	15647109	4
Deletion	Chr10	16218492	16218501	9
Deletion	Chr10	18885131	18885132	1
Deletion	Chr10	19523072	19523081	9	OsKitaake10g143500
Deletion	Chr9	22187902	22187914	12
Deletion	Chr5	22554888	22554896	8
Deletion	Chr1	22901020	22901047	27
Deletion	Chr8	24924250	24924255	5
Deletion	Chr6	25800905	25800915	10
Deletion	Chr1	26797256	26797293	37
Deletion	Chr7	28023827	28023832	5	OsKitaake07g263501
Deletion	Chr11	28198573	28198585	12
Deletion	Chr11	28238063	28238073	10
Deletion	Chr2	32985016	32985021	5
Deletion	Chr1	34750959	34750960	1
Deletion	Chr3	35776889	35776911	22
Deletion	Chr4	35968803	35968816	13
Deletion	Chr4	36685219	36685230	11
Deletion	Chr1	38984286	38984287	1
Deletion	Chr1	41148124	41148126	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	11440760	11445537	OsKitaake09g071000
Inversion	Chr9	11440770	11445541	OsKitaake09g071000
Inversion	Chr1	22590947	22899289	OsKitaake01g217900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes