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| Mutant Information |
|---|
| Mutant Name | FN4071-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4071-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 10015258 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 58661 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 30861321 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g314900 |
| SBS | Chr3 | 19714763 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 20582484 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 20582485 | C-A | Homo | INTERGENIC | |
| SBS | Chr3 | 31997758 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 5747314 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9549690 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 36602387 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 36602388 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 16643746 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4033260 | G-C | Hetero | INTRON | |
| SBS | Chr6 | 5312468 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 20268265 | A-G | Hetero | INTRON | |
| SBS | Chr6 | 22783256 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 28732733 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g265300 |
| SBS | Chr8 | 4208421 | C-A | Hetero | INTRON | |
| SBS | Chr9 | 1059441 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 6710693 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 8359828 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 20242532 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 1616664 | T-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 12565714 | C-G | Homo | INTERGENIC | |
| SBS | Chr11 | 18348534 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 7961211 | C-T | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 2914001 | 2914002 | 1 | |
| Deletion | Chr11 | 5482915 | 5482935 | 20 | |
| Deletion | Chr5 | 5685549 | 5685552 | 3 | |
| Deletion | Chr5 | 5886008 | 5886009 | 1 | |
| Deletion | Chr12 | 11939140 | 11939141 | 1 | |
| Deletion | Chr5 | 12515534 | 12515689 | 155 | |
| Deletion | Chr5 | 15448001 | 15662000 | 213999 | 14 |
| Deletion | Chr5 | 15702001 | 16113000 | 410999 | 26 |
| Deletion | Chr1 | 22276174 | 22276181 | 7 | OsKitaake01g213300 |
| Deletion | Chr6 | 23464058 | 23464068 | 10 | |
| Deletion | Chr2 | 33015171 | 33015172 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 13135367 | 13135373 | 5 | |
| Insertion | Chr3 | 32406136 | 32406141 | 4 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 16153068 | 16353511 | 2 |
| Inversion | Chr2 | 16153072 | 16353511 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 15299884 | Chr1 | 1514334 |