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Mutant Information

Mutant Name	FN4072-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4072-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6840595 C-T Hetero INTERGENIC
SBS Chr1 12245168 T-A Hetero INTERGENIC
SBS Chr1 15084996 G-A Homo INTERGENIC
SBS Chr1 42034290 C-T Hetero INTRON
SBS Chr2 32310939 T-A Hetero INTERGENIC
SBS Chr2 33198150 A-G Hetero INTRON
SBS Chr3 6642677 G-A Homo SYNONYMOUS_CODING
SBS Chr3 29241914 G-A Homo INTERGENIC
SBS Chr3 34568827 A-G Hetero INTERGENIC
SBS Chr4 1531932 T-G Hetero UTR_3_PRIME
SBS Chr4 1531933 A-T Hetero UTR_3_PRIME
SBS Chr4 2296860 G-A Hetero INTERGENIC
SBS Chr4 2296861 G-A Hetero INTERGENIC
SBS Chr4 10478003 C-T Hetero INTERGENIC
SBS Chr4 18667668 C-A Hetero INTERGENIC
SBS Chr4 29184757 G-A Hetero INTERGENIC
SBS Chr5 5819463 G-A Hetero INTERGENIC
SBS Chr5 5819464 G-A Hetero INTERGENIC
SBS Chr5 5819465 G-A Hetero INTERGENIC
SBS Chr5 14149338 C-A Hetero INTERGENIC
SBS Chr5 15226131 C-T Hetero INTERGENIC
SBS Chr5 15821863 A-G Hetero INTERGENIC
SBS Chr5 27492201 T-C Homo INTERGENIC
SBS Chr5 27526190 A-C Homo INTERGENIC
SBS Chr6 4771789 G-A Hetero INTERGENIC
SBS Chr6 14912675 C-T Homo INTERGENIC
SBS Chr6 15148754 G-A Homo INTERGENIC
SBS Chr6 21241070 G-T Homo INTERGENIC
SBS Chr6 21241071 A-G Homo INTERGENIC
SBS Chr6 29576334 A-G Hetero INTERGENIC
SBS Chr7 27327472 A-G Hetero INTERGENIC
SBS Chr10 13676797 C-A Homo SYNONYMOUS_CODING
SBS Chr10 18870699 C-T Homo INTERGENIC
SBS Chr11 9292719 T-A Homo INTERGENIC
SBS Chr11 9294537 C-T Homo INTERGENIC
SBS Chr12 3732959 C-A Hetero SPLICE_SITE_REGION
SBS Chr12 27063750 G-T Hetero INTERGENIC
SBS Chr12 27063751 A-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2835049 2835053 4
Deletion Chr1 4095455 4095457 2
Deletion Chr8 7239001 7258000 18999 OsKitaake08g069628
Deletion Chr11 9292744 9292745 1
Deletion Chr8 12766112 12766113 1
Deletion Chr11 14704877 14704879 2
Deletion Chr6 15918603 15918604 1
Deletion Chr4 17217259 17217262 3
Deletion Chr2 20914146 20914149 3
Deletion Chr1 22459717 22459718 1 OsKitaake01g214500
Deletion Chr10 23282786 23282787 1 2
Deletion Chr2 27217491 27217496 5

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 36612697 36612700 2
Insertion Chr3 6684510 6684513 2
Insertion Chr3 23321519 23321523 3
Insertion Chr6 60645 60647 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 15592762 16073642
Inversion Chr11 21695513 21715540 OsKitaake11g172100
Inversion Chr11 21695526 21715569 OsKitaake11g172100

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 992951 Chr1 28364920
Translocation Chr10 993424 Chr1 28364982
Translocation Chr8 7240209 Chr1 21927760 OsKitaake01g211000
Translocation Chr8 7254586 Chr1 21927762 OsKitaake01g211000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6840595	C-T	Hetero	INTERGENIC
SBS	Chr1	12245168	T-A	Hetero	INTERGENIC
SBS	Chr1	15084996	G-A	Homo	INTERGENIC
SBS	Chr1	42034290	C-T	Hetero	INTRON
SBS	Chr2	32310939	T-A	Hetero	INTERGENIC
SBS	Chr2	33198150	A-G	Hetero	INTRON
SBS	Chr3	6642677	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr3	29241914	G-A	Homo	INTERGENIC
SBS	Chr3	34568827	A-G	Hetero	INTERGENIC
SBS	Chr4	1531932	T-G	Hetero	UTR_3_PRIME
SBS	Chr4	1531933	A-T	Hetero	UTR_3_PRIME
SBS	Chr4	2296860	G-A	Hetero	INTERGENIC
SBS	Chr4	2296861	G-A	Hetero	INTERGENIC
SBS	Chr4	10478003	C-T	Hetero	INTERGENIC
SBS	Chr4	18667668	C-A	Hetero	INTERGENIC
SBS	Chr4	29184757	G-A	Hetero	INTERGENIC
SBS	Chr5	5819463	G-A	Hetero	INTERGENIC
SBS	Chr5	5819464	G-A	Hetero	INTERGENIC
SBS	Chr5	5819465	G-A	Hetero	INTERGENIC
SBS	Chr5	14149338	C-A	Hetero	INTERGENIC
SBS	Chr5	15226131	C-T	Hetero	INTERGENIC
SBS	Chr5	15821863	A-G	Hetero	INTERGENIC
SBS	Chr5	27492201	T-C	Homo	INTERGENIC
SBS	Chr5	27526190	A-C	Homo	INTERGENIC
SBS	Chr6	4771789	G-A	Hetero	INTERGENIC
SBS	Chr6	14912675	C-T	Homo	INTERGENIC
SBS	Chr6	15148754	G-A	Homo	INTERGENIC
SBS	Chr6	21241070	G-T	Homo	INTERGENIC
SBS	Chr6	21241071	A-G	Homo	INTERGENIC
SBS	Chr6	29576334	A-G	Hetero	INTERGENIC
SBS	Chr7	27327472	A-G	Hetero	INTERGENIC
SBS	Chr10	13676797	C-A	Homo	SYNONYMOUS_CODING
SBS	Chr10	18870699	C-T	Homo	INTERGENIC
SBS	Chr11	9292719	T-A	Homo	INTERGENIC
SBS	Chr11	9294537	C-T	Homo	INTERGENIC
SBS	Chr12	3732959	C-A	Hetero	SPLICE_SITE_REGION
SBS	Chr12	27063750	G-T	Hetero	INTERGENIC
SBS	Chr12	27063751	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2835049	2835053	4
Deletion	Chr1	4095455	4095457	2
Deletion	Chr8	7239001	7258000	18999	OsKitaake08g069628
Deletion	Chr11	9292744	9292745	1
Deletion	Chr8	12766112	12766113	1
Deletion	Chr11	14704877	14704879	2
Deletion	Chr6	15918603	15918604	1
Deletion	Chr4	17217259	17217262	3
Deletion	Chr2	20914146	20914149	3
Deletion	Chr1	22459717	22459718	1	OsKitaake01g214500
Deletion	Chr10	23282786	23282787	1	2
Deletion	Chr2	27217491	27217496	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	15592762	16073642
Inversion	Chr11	21695513	21715540	OsKitaake11g172100
Inversion	Chr11	21695526	21715569	OsKitaake11g172100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes