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Mutant Information

Mutant Name	FN4073-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4073-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15565539 G-C Hetero INTERGENIC
SBS Chr3 23613831 G-A Homo INTERGENIC
SBS Chr4 10239281 A-G Homo INTERGENIC
SBS Chr5 12587414 C-A Homo INTERGENIC
SBS Chr6 13748497 G-T Homo INTRON
SBS Chr6 13754622 A-C Homo UTR_3_PRIME
SBS Chr6 13761169 C-G Homo INTERGENIC
SBS Chr6 25546601 C-A Hetero INTRON
SBS Chr7 5274487 C-A Hetero INTRON
SBS Chr7 8025738 C-T Hetero INTERGENIC
SBS Chr7 16567058 G-A Hetero INTERGENIC
SBS Chr7 17592657 C-A Hetero INTRON
SBS Chr8 7066470 G-A Hetero INTERGENIC
SBS Chr8 11572691 G-A Homo INTERGENIC
SBS Chr8 27401290 G-T Homo INTRON
SBS Chr9 7214449 A-G Homo INTERGENIC
SBS Chr9 11199033 T-G Hetero SPLICE_SITE_REGION
SBS Chr10 20767496 G-A Hetero INTERGENIC
SBS Chr11 10514896 A-T Homo INTERGENIC
SBS Chr11 23548311 G-A Hetero INTERGENIC
SBS Chr11 28202009 A-T Hetero INTERGENIC
SBS Chr12 3818323 T-A Hetero UTR_5_PRIME

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 976639 976642 3
Deletion Chr3 1473427 1473434 7
Deletion Chr5 3381984 3381985 1
Deletion Chr12 4026001 4071000 44999 9
Deletion Chr3 8546295 8546296 1 OsKitaake03g117000
Deletion Chr6 8585985 8585992 7
Deletion Chr6 11277838 11277849 11
Deletion Chr10 12860678 12860682 4
Deletion Chr6 13761179 13761187 8
Deletion Chr1 14371001 14382000 10999 OsKitaake01g163900
Deletion Chr3 14536890 14536905 15
Deletion Chr8 16687975 16687976 1
Deletion Chr1 21591001 21631000 39999 8
Deletion Chr1 21633001 21866000 232999 23
Deletion Chr1 21870001 21926000 55999 5
Deletion Chr3 22461585 22461756 171
Deletion Chr4 24314475 24314479 4
Deletion Chr12 24421001 24463000 41999 2
Deletion Chr4 34934393 34934395 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18849486 18849489 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 24421465 Chr11 9513307 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15565539	G-C	Hetero	INTERGENIC
SBS	Chr3	23613831	G-A	Homo	INTERGENIC
SBS	Chr4	10239281	A-G	Homo	INTERGENIC
SBS	Chr5	12587414	C-A	Homo	INTERGENIC
SBS	Chr6	13748497	G-T	Homo	INTRON
SBS	Chr6	13754622	A-C	Homo	UTR_3_PRIME
SBS	Chr6	13761169	C-G	Homo	INTERGENIC
SBS	Chr6	25546601	C-A	Hetero	INTRON
SBS	Chr7	5274487	C-A	Hetero	INTRON
SBS	Chr7	8025738	C-T	Hetero	INTERGENIC
SBS	Chr7	16567058	G-A	Hetero	INTERGENIC
SBS	Chr7	17592657	C-A	Hetero	INTRON
SBS	Chr8	7066470	G-A	Hetero	INTERGENIC
SBS	Chr8	11572691	G-A	Homo	INTERGENIC
SBS	Chr8	27401290	G-T	Homo	INTRON
SBS	Chr9	7214449	A-G	Homo	INTERGENIC
SBS	Chr9	11199033	T-G	Hetero	SPLICE_SITE_REGION
SBS	Chr10	20767496	G-A	Hetero	INTERGENIC
SBS	Chr11	10514896	A-T	Homo	INTERGENIC
SBS	Chr11	23548311	G-A	Hetero	INTERGENIC
SBS	Chr11	28202009	A-T	Hetero	INTERGENIC
SBS	Chr12	3818323	T-A	Hetero	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	976639	976642	3
Deletion	Chr3	1473427	1473434	7
Deletion	Chr5	3381984	3381985	1
Deletion	Chr12	4026001	4071000	44999	9
Deletion	Chr3	8546295	8546296	1	OsKitaake03g117000
Deletion	Chr6	8585985	8585992	7
Deletion	Chr6	11277838	11277849	11
Deletion	Chr10	12860678	12860682	4
Deletion	Chr6	13761179	13761187	8
Deletion	Chr1	14371001	14382000	10999	OsKitaake01g163900
Deletion	Chr3	14536890	14536905	15
Deletion	Chr8	16687975	16687976	1
Deletion	Chr1	21591001	21631000	39999	8
Deletion	Chr1	21633001	21866000	232999	23
Deletion	Chr1	21870001	21926000	55999	5
Deletion	Chr3	22461585	22461756	171
Deletion	Chr4	24314475	24314479	4
Deletion	Chr12	24421001	24463000	41999	2
Deletion	Chr4	34934393	34934395	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	24421465	Chr11	9513307	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes