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| Mutant Information |
|---|
| Mutant Name | FN4074-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4074-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 38
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 771490 | T-C | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 3482723 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 5186994 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 25905406 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3664271 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 12497338 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 14913228 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 34917935 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 31166902 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 34480835 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 12056723 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 26745698 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 28662726 | C-T | Homo | INTRON | |
| SBS | Chr6 | 14723204 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 16191657 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 20285318 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 23258509 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 30235835 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 5395751 | A-G | Hetero | INTRON | |
| SBS | Chr7 | 6415902 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 7740803 | G-A | Hetero | INTRON | |
| SBS | Chr7 | 11801122 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 17056630 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 20669797 | G-A | Homo | INTRON | |
| SBS | Chr7 | 21140400 | T-A | Hetero | UTR_5_PRIME | |
| SBS | Chr7 | 25350313 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 6775032 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 6899932 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13995283 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 16207593 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 6645491 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 6835637 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 12968094 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 6594253 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 26008966 | T-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 7789288 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 8560290 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 18581308 | G-C | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 306001 | 371000 | 64999 | 11 |
| Deletion | Chr4 | 740326 | 740327 | 1 | |
| Deletion | Chr5 | 5453711 | 5453712 | 1 | |
| Deletion | Chr11 | 8734870 | 8734882 | 12 | |
| Deletion | Chr9 | 14304053 | 14304056 | 3 | |
| Deletion | Chr11 | 14562006 | 14562010 | 4 | |
| Deletion | Chr5 | 19221001 | 19253000 | 31999 | 4 |
| Deletion | Chr5 | 19314450 | 19314470 | 20 | |
| Deletion | Chr5 | 19429289 | 19429300 | 11 | |
| Deletion | Chr1 | 20399653 | 20399655 | 2 | |
| Deletion | Chr2 | 25866867 | 25866868 | 1 | OsKitaake02g255000 |
| Deletion | Chr4 | 26373294 | 26373300 | 6 | |
| Deletion | Chr2 | 27791115 | 27791117 | 2 | |
| Deletion | Chr4 | 32570105 | 32570109 | 4 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 131839 | Chr6 | 2372154 | 2 |
| Translocation | Chr12 | 503779 | Chr6 | 2372029 | 2 |
| Translocation | Chr12 | 23322368 | Chr1 | 13933230 | |
| Translocation | Chr5 | 24554719 | Chr1 | 14189743 | |
| Translocation | Chr5 | 24554734 | Chr1 | 14189648 |