Search Kitaake

Mutant Information

Mutant Name	FN4075-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4075-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 28954928 A-T Homo INTERGENIC
SBS Chr1 36485376 C-T Hetero INTERGENIC
SBS Chr2 20696162 A-G Homo INTERGENIC
SBS Chr3 11585541 G-A Homo INTERGENIC
SBS Chr4 19464505 C-T Hetero INTERGENIC
SBS Chr4 24740675 A-T Hetero UTR_3_PRIME
SBS Chr4 35932858 A-G Hetero INTRON
SBS Chr4 35932862 C-A Hetero INTRON
SBS Chr5 355583 G-A Homo INTERGENIC
SBS Chr5 2280886 G-T Hetero INTERGENIC
SBS Chr5 2280887 G-T Hetero INTERGENIC
SBS Chr5 4443857 C-T Homo INTERGENIC
SBS Chr5 10325538 G-A Homo INTERGENIC
SBS Chr5 29451204 A-T Hetero INTERGENIC
SBS Chr6 12760361 A-T Hetero INTERGENIC
SBS Chr6 12760362 G-T Hetero INTERGENIC
SBS Chr6 15323264 G-A Hetero INTERGENIC
SBS Chr7 5794517 C-T Hetero INTERGENIC
SBS Chr7 13396205 C-T Hetero INTERGENIC
SBS Chr7 14857320 A-C Hetero INTERGENIC
SBS Chr7 27957051 T-A Hetero INTERGENIC
SBS Chr8 10044345 C-G Homo INTERGENIC
SBS Chr8 18168877 A-G Homo INTERGENIC
SBS Chr9 4310757 A-G Hetero INTERGENIC
SBS Chr9 14396888 A-G Homo INTERGENIC
SBS Chr10 15846900 A-G Hetero INTRON
SBS Chr10 21779201 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g174800
SBS Chr12 2018836 G-C Hetero INTERGENIC
SBS Chr12 26376491 T-C Hetero INTERGENIC

Deletions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 4808338 4808346 8
Deletion Chr6 7329001 7351000 21999 7
Deletion Chr3 11585045 11585055 10
Deletion Chr11 12671141 12671142 1
Deletion Chr8 12823002 12823003 1
Deletion Chr6 17952739 17952742 3
Deletion Chr12 20345707 20345712 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8456384 8456388 3
Insertion Chr6 5139506 5139508 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 19453557 19738152 OsKitaake08g145000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28954928	A-T	Homo	INTERGENIC
SBS	Chr1	36485376	C-T	Hetero	INTERGENIC
SBS	Chr2	20696162	A-G	Homo	INTERGENIC
SBS	Chr3	11585541	G-A	Homo	INTERGENIC
SBS	Chr4	19464505	C-T	Hetero	INTERGENIC
SBS	Chr4	24740675	A-T	Hetero	UTR_3_PRIME
SBS	Chr4	35932858	A-G	Hetero	INTRON
SBS	Chr4	35932862	C-A	Hetero	INTRON
SBS	Chr5	355583	G-A	Homo	INTERGENIC
SBS	Chr5	2280886	G-T	Hetero	INTERGENIC
SBS	Chr5	2280887	G-T	Hetero	INTERGENIC
SBS	Chr5	4443857	C-T	Homo	INTERGENIC
SBS	Chr5	10325538	G-A	Homo	INTERGENIC
SBS	Chr5	29451204	A-T	Hetero	INTERGENIC
SBS	Chr6	12760361	A-T	Hetero	INTERGENIC
SBS	Chr6	12760362	G-T	Hetero	INTERGENIC
SBS	Chr6	15323264	G-A	Hetero	INTERGENIC
SBS	Chr7	5794517	C-T	Hetero	INTERGENIC
SBS	Chr7	13396205	C-T	Hetero	INTERGENIC
SBS	Chr7	14857320	A-C	Hetero	INTERGENIC
SBS	Chr7	27957051	T-A	Hetero	INTERGENIC
SBS	Chr8	10044345	C-G	Homo	INTERGENIC
SBS	Chr8	18168877	A-G	Homo	INTERGENIC
SBS	Chr9	4310757	A-G	Hetero	INTERGENIC
SBS	Chr9	14396888	A-G	Homo	INTERGENIC
SBS	Chr10	15846900	A-G	Hetero	INTRON
SBS	Chr10	21779201	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g174800
SBS	Chr12	2018836	G-C	Hetero	INTERGENIC
SBS	Chr12	26376491	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	4808338	4808346	8
Deletion	Chr6	7329001	7351000	21999	7
Deletion	Chr3	11585045	11585055	10
Deletion	Chr11	12671141	12671142	1
Deletion	Chr8	12823002	12823003	1
Deletion	Chr6	17952739	17952742	3
Deletion	Chr12	20345707	20345712	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	19453557	19738152	OsKitaake08g145000

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes