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Mutant Information

Mutant Name	FN4077-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4077-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7069917 A-T Hetero INTERGENIC
SBS Chr1 7069918 T-A Hetero INTERGENIC
SBS Chr1 14722153 A-T Homo INTERGENIC
SBS Chr1 23923738 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g229800
SBS Chr1 23923739 G-T Homo NON_SYNONYMOUS_CODING OsKitaake01g229800
SBS Chr1 27654146 G-A Homo INTERGENIC
SBS Chr1 29378704 T-C Homo UTR_3_PRIME
SBS Chr1 29487394 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 38627400 C-T Hetero INTERGENIC
SBS Chr1 43389013 G-C Hetero INTERGENIC
SBS Chr2 18386822 C-T Homo INTERGENIC
SBS Chr2 33225156 C-T Homo INTERGENIC
SBS Chr3 11992209 T-C Hetero SYNONYMOUS_CODING
SBS Chr3 26047034 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g274350
SBS Chr5 19887185 G-A Hetero INTERGENIC
SBS Chr5 28317976 G-A Homo INTERGENIC
SBS Chr6 11356692 G-T Hetero INTERGENIC
SBS Chr7 28590080 T-C Hetero INTERGENIC
SBS Chr8 14079850 C-G Homo INTERGENIC
SBS Chr8 21603144 A-C Homo INTERGENIC
SBS Chr9 8015277 C-T Homo INTERGENIC
SBS Chr9 18972489 T-C Hetero INTERGENIC
SBS Chr10 5430652 G-T Homo INTERGENIC
SBS Chr10 5430653 C-G Homo INTERGENIC
SBS Chr11 5397850 C-T Homo INTERGENIC
SBS Chr11 18839831 T-A Homo INTRON

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2799638 2799639 1
Deletion Chr11 8398788 8398836 48
Deletion Chr9 10715885 10715900 15
Deletion Chr7 15728731 15728732 1
Deletion Chr5 16001252 16001253 1
Deletion Chr2 19357926 19357927 1
Deletion Chr7 27703306 27703307 1
Deletion Chr8 28099273 28099285 12
Deletion Chr3 33263626 33263635 9
Deletion Chr4 34313838 34313851 13

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 24388085 24388089 3
Insertion Chr4 18297099 18297101 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 13866105 14778351
Inversion Chr1 13866117 14722596 OsKitaake01g166700
Inversion Chr7 15647961 16170492 OsKitaake07g134100
Inversion Chr7 15647967 16337604 OsKitaake07g134900
Inversion Chr11 18842559 19343208 OsKitaake11g147100

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 12913059 Chr1 23650641
Translocation Chr5 12914643 Chr1 20737777

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7069917	A-T	Hetero	INTERGENIC
SBS	Chr1	7069918	T-A	Hetero	INTERGENIC
SBS	Chr1	14722153	A-T	Homo	INTERGENIC
SBS	Chr1	23923738	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g229800
SBS	Chr1	23923739	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g229800
SBS	Chr1	27654146	G-A	Homo	INTERGENIC
SBS	Chr1	29378704	T-C	Homo	UTR_3_PRIME
SBS	Chr1	29487394	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	38627400	C-T	Hetero	INTERGENIC
SBS	Chr1	43389013	G-C	Hetero	INTERGENIC
SBS	Chr2	18386822	C-T	Homo	INTERGENIC
SBS	Chr2	33225156	C-T	Homo	INTERGENIC
SBS	Chr3	11992209	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr3	26047034	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g274350
SBS	Chr5	19887185	G-A	Hetero	INTERGENIC
SBS	Chr5	28317976	G-A	Homo	INTERGENIC
SBS	Chr6	11356692	G-T	Hetero	INTERGENIC
SBS	Chr7	28590080	T-C	Hetero	INTERGENIC
SBS	Chr8	14079850	C-G	Homo	INTERGENIC
SBS	Chr8	21603144	A-C	Homo	INTERGENIC
SBS	Chr9	8015277	C-T	Homo	INTERGENIC
SBS	Chr9	18972489	T-C	Hetero	INTERGENIC
SBS	Chr10	5430652	G-T	Homo	INTERGENIC
SBS	Chr10	5430653	C-G	Homo	INTERGENIC
SBS	Chr11	5397850	C-T	Homo	INTERGENIC
SBS	Chr11	18839831	T-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2799638	2799639	1
Deletion	Chr11	8398788	8398836	48
Deletion	Chr9	10715885	10715900	15
Deletion	Chr7	15728731	15728732	1
Deletion	Chr5	16001252	16001253	1
Deletion	Chr2	19357926	19357927	1
Deletion	Chr7	27703306	27703307	1
Deletion	Chr8	28099273	28099285	12
Deletion	Chr3	33263626	33263635	9
Deletion	Chr4	34313838	34313851	13

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	13866105	14778351
Inversion	Chr1	13866117	14722596	OsKitaake01g166700
Inversion	Chr7	15647961	16170492	OsKitaake07g134100
Inversion	Chr7	15647967	16337604	OsKitaake07g134900
Inversion	Chr11	18842559	19343208	OsKitaake11g147100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes