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| Mutant Information |
|---|
| Mutant Name | FN4080-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4080-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 25976862 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 42130729 | G-A | Homo | INTRON | |
| SBS | Chr2 | 4835897 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 9822106 | G-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 14708133 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 2920389 | T-A | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr3 | 6029650 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 11982652 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 21410340 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 25737222 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 28826299 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 23483957 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 27103828 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 10511681 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 19251554 | T-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 24085175 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 2321355 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g030200 |
| SBS | Chr6 | 15579069 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 20970803 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 54756 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 54757 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr9 | 469163 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 469166 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 469167 | T-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 1803778 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 4527197 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 16345636 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 17565141 | A-T | Hetero | UTR_3_PRIME | |
| SBS | Chr11 | 14795384 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 18208847 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake11g141900 |
| SBS | Chr11 | 24019578 | A-G | Hetero | INTRON | |
| SBS | Chr12 | 3723118 | A-T | Hetero | INTRON | |
| SBS | Chr12 | 23616526 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g189700 |
Deletions: 7
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 4177001 | 4202000 | 24999 | |
| Deletion | Chr3 | 19840542 | 19840543 | 1 | |
| Deletion | Chr6 | 22174103 | 22174113 | 10 | |
| Deletion | Chr11 | 25859001 | 26156000 | 296999 | 32 |
| Deletion | Chr1 | 27920508 | 27920511 | 3 | |
| Deletion | Chr2 | 30640884 | 30640893 | 9 | OsKitaake02g313600 |
| Deletion | Chr1 | 32841353 | 32841357 | 4 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 13955425 | 13955428 | 2 | |
| Insertion | Chr8 | 21461617 | 21461620 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr6 | 27341665 | 27373666 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 4126559 | Chr3 | 7448987 | OsKitaake05g049600 |
| Translocation | Chr6 | 27373656 | Chr5 | 4126532 | OsKitaake05g049600 |