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| Mutant Information |
|---|
| Mutant Name | FN4081-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4081-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19004417 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 31765739 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 33894499 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 4625318 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 8680632 | C-T | Hetero | START_GAINED | |
| SBS | Chr3 | 12195802 | A-T | Homo | INTERGENIC | |
| SBS | Chr3 | 26550858 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3445935 | C-A | Homo | INTERGENIC | |
| SBS | Chr4 | 3904923 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 15949340 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 18047527 | T-G | Homo | INTERGENIC | |
| SBS | Chr4 | 20697197 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g111900 |
| SBS | Chr4 | 25588532 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 24386424 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 23394185 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 3143991 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 4898662 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g059900 |
| SBS | Chr7 | 8654709 | C-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 15009480 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g125600 |
| SBS | Chr7 | 16263214 | C-G | Hetero | INTRON | |
| SBS | Chr7 | 16263215 | C-A | Hetero | INTRON | |
| SBS | Chr8 | 11949709 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 23224299 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 910526 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 8105678 | A-G | Homo | INTRON | |
| SBS | Chr10 | 8638342 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 15457882 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 20676797 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 28650885 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 1803134 | C-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g026900 |
| SBS | Chr12 | 6687814 | T-C | Homo | INTRON | |
| SBS | Chr12 | 22257137 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g175000 |
| SBS | Chr12 | 23323494 | G-A | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 195341 | 195345 | 4 | OsKitaake02g003400 |
| Deletion | Chr8 | 903824 | 903826 | 2 | |
| Deletion | Chr4 | 1274330 | 1274331 | 1 | |
| Deletion | Chr4 | 4023223 | 4023233 | 10 | |
| Deletion | Chr9 | 4711337 | 4711338 | 1 | |
| Deletion | Chr4 | 5837769 | 5837780 | 11 | |
| Deletion | Chr8 | 12533117 | 12533145 | 28 | |
| Deletion | Chr10 | 20831712 | 20831718 | 6 | |
| Deletion | Chr1 | 20976898 | 20976901 | 3 | |
| Deletion | Chr1 | 26588174 | 26588175 | 1 | |
| Deletion | Chr4 | 32961813 | 32961818 | 5 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr12 | 23473143 | 23473147 | 3 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 881509 | 1088307 | OsKitaake04g008400 |
| Inversion | Chr4 | 881701 | 1088317 | OsKitaake04g008400 |
| Inversion | Chr10 | 4248031 | 4481835 | |
| Inversion | Chr10 | 4248057 | 4481836 | |
| Inversion | Chr1 | 11961881 | 12219962 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 3482518 | Chr1 | 25957861 |