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Mutant Information

Mutant Name	FN4082-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4082-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11986649 G-T Homo INTRON
SBS Chr1 13723097 T-C Homo INTERGENIC
SBS Chr1 19795575 T-G Homo INTERGENIC
SBS Chr1 29309688 C-T Homo INTERGENIC
SBS Chr1 30721161 A-T Homo INTERGENIC
SBS Chr1 33237772 A-G Homo INTERGENIC
SBS Chr1 38688869 A-G Homo INTERGENIC
SBS Chr1 38688871 G-T Homo INTERGENIC
SBS Chr1 43003798 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g474500
SBS Chr2 2884189 C-G Hetero SYNONYMOUS_CODING
SBS Chr2 11277359 A-C Hetero INTERGENIC
SBS Chr2 11277363 T-A Hetero INTERGENIC
SBS Chr2 33647662 C-T Hetero INTERGENIC
SBS Chr3 1035815 A-T Hetero INTERGENIC
SBS Chr3 16390789 T-G Hetero SPLICE_SITE_ACCEPTOR OsKitaake03g207900
SBS Chr3 23235110 C-A Hetero UTR_3_PRIME
SBS Chr4 2303442 G-T Hetero INTERGENIC
SBS Chr4 34964867 A-G Hetero INTRON
SBS Chr5 2720547 C-T Homo INTERGENIC
SBS Chr5 14829300 A-C Hetero INTERGENIC
SBS Chr5 15542985 G-A Homo INTERGENIC
SBS Chr5 16351345 C-T Hetero INTERGENIC
SBS Chr5 17951103 A-C Hetero INTERGENIC
SBS Chr5 26461365 T-A Hetero INTERGENIC
SBS Chr5 27672830 T-A Hetero UTR_3_PRIME
SBS Chr6 22335816 A-G Hetero INTRON
SBS Chr8 7438342 G-A Hetero INTERGENIC
SBS Chr9 9629319 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g058700
SBS Chr9 20491093 G-A Hetero INTERGENIC
SBS Chr10 5168740 G-T Hetero UTR_3_PRIME
SBS Chr10 8183281 T-A Hetero INTERGENIC
SBS Chr10 8903915 G-T Hetero INTERGENIC
SBS Chr10 12775442 G-C Hetero INTERGENIC
SBS Chr11 17376226 A-G Homo INTERGENIC
SBS Chr11 26897185 A-G Hetero INTERGENIC
SBS Chr12 1311484 G-T Homo INTERGENIC
SBS Chr12 7916947 C-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 756074 756080 6
Deletion Chr10 1606001 1948000 341999 39
Deletion Chr7 5662332 5662333 1 OsKitaake07g068900
Deletion Chr8 9818415 9818418 3
Deletion Chr3 11089484 11089488 4
Deletion Chr8 11294198 11294204 6
Deletion Chr3 11504566 11504575 9
Deletion Chr1 16397016 16397017 1
Deletion Chr6 19382416 19382417 1
Deletion Chr11 21250550 21250551 1
Deletion Chr8 21424310 21424311 1
Deletion Chr4 25871941 25871943 2
Deletion Chr1 38754398 38754405 7 OsKitaake01g414700

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 21197580 21197583 2
Insertion Chr4 1942812 1942815 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 28254980 28272182
Inversion Chr2 33486891 33637076
Inversion Chr2 33486901 33637086

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 22412391 Chr5 27673133 2
Translocation Chr7 22436944 Chr5 27673129 OsKitaake05g252800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11986649	G-T	Homo	INTRON
SBS	Chr1	13723097	T-C	Homo	INTERGENIC
SBS	Chr1	19795575	T-G	Homo	INTERGENIC
SBS	Chr1	29309688	C-T	Homo	INTERGENIC
SBS	Chr1	30721161	A-T	Homo	INTERGENIC
SBS	Chr1	33237772	A-G	Homo	INTERGENIC
SBS	Chr1	38688869	A-G	Homo	INTERGENIC
SBS	Chr1	38688871	G-T	Homo	INTERGENIC
SBS	Chr1	43003798	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g474500
SBS	Chr2	2884189	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr2	11277359	A-C	Hetero	INTERGENIC
SBS	Chr2	11277363	T-A	Hetero	INTERGENIC
SBS	Chr2	33647662	C-T	Hetero	INTERGENIC
SBS	Chr3	1035815	A-T	Hetero	INTERGENIC
SBS	Chr3	16390789	T-G	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake03g207900
SBS	Chr3	23235110	C-A	Hetero	UTR_3_PRIME
SBS	Chr4	2303442	G-T	Hetero	INTERGENIC
SBS	Chr4	34964867	A-G	Hetero	INTRON
SBS	Chr5	2720547	C-T	Homo	INTERGENIC
SBS	Chr5	14829300	A-C	Hetero	INTERGENIC
SBS	Chr5	15542985	G-A	Homo	INTERGENIC
SBS	Chr5	16351345	C-T	Hetero	INTERGENIC
SBS	Chr5	17951103	A-C	Hetero	INTERGENIC
SBS	Chr5	26461365	T-A	Hetero	INTERGENIC
SBS	Chr5	27672830	T-A	Hetero	UTR_3_PRIME
SBS	Chr6	22335816	A-G	Hetero	INTRON
SBS	Chr8	7438342	G-A	Hetero	INTERGENIC
SBS	Chr9	9629319	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g058700
SBS	Chr9	20491093	G-A	Hetero	INTERGENIC
SBS	Chr10	5168740	G-T	Hetero	UTR_3_PRIME
SBS	Chr10	8183281	T-A	Hetero	INTERGENIC
SBS	Chr10	8903915	G-T	Hetero	INTERGENIC
SBS	Chr10	12775442	G-C	Hetero	INTERGENIC
SBS	Chr11	17376226	A-G	Homo	INTERGENIC
SBS	Chr11	26897185	A-G	Hetero	INTERGENIC
SBS	Chr12	1311484	G-T	Homo	INTERGENIC
SBS	Chr12	7916947	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	756074	756080	6
Deletion	Chr10	1606001	1948000	341999	39
Deletion	Chr7	5662332	5662333	1	OsKitaake07g068900
Deletion	Chr8	9818415	9818418	3
Deletion	Chr3	11089484	11089488	4
Deletion	Chr8	11294198	11294204	6
Deletion	Chr3	11504566	11504575	9
Deletion	Chr1	16397016	16397017	1
Deletion	Chr6	19382416	19382417	1
Deletion	Chr11	21250550	21250551	1
Deletion	Chr8	21424310	21424311	1
Deletion	Chr4	25871941	25871943	2
Deletion	Chr1	38754398	38754405	7	OsKitaake01g414700

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	28254980	28272182
Inversion	Chr2	33486891	33637076
Inversion	Chr2	33486901	33637086

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes