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Mutant Information

Mutant Name	FN4083-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4083-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4217897 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g056500
SBS Chr1 28598100 A-T Homo INTERGENIC
SBS Chr1 32445106 T-A Homo INTERGENIC
SBS Chr2 7802226 A-G Homo INTRON
SBS Chr2 16358747 C-A Homo INTERGENIC
SBS Chr2 33241945 G-A Homo INTERGENIC
SBS Chr2 36540121 T-G Homo INTERGENIC
SBS Chr3 1469654 C-T Homo INTERGENIC
SBS Chr3 28847672 G-A Hetero INTERGENIC
SBS Chr3 32136036 T-C Homo INTERGENIC
SBS Chr4 15489410 C-G Homo INTERGENIC
SBS Chr4 27089267 C-T Hetero INTERGENIC
SBS Chr4 28863063 G-A Hetero INTERGENIC
SBS Chr4 29180540 C-T Hetero INTERGENIC
SBS Chr4 30469328 C-T Hetero INTERGENIC
SBS Chr4 30469329 T-C Hetero INTERGENIC
SBS Chr4 34947210 G-A Hetero INTRON
SBS Chr5 4682027 G-A Hetero INTERGENIC
SBS Chr5 13625810 G-A Hetero INTERGENIC
SBS Chr5 21034005 C-T Hetero INTERGENIC
SBS Chr6 14355169 A-C Homo INTERGENIC
SBS Chr7 13320761 A-T Hetero INTERGENIC
SBS Chr8 4101506 G-A Homo INTERGENIC
SBS Chr8 6190754 C-T Homo INTRON
SBS Chr9 1600730 A-G Homo INTRON
SBS Chr9 18252136 T-A Hetero STOP_GAINED OsKitaake09g141600
SBS Chr11 253029 T-C Hetero INTERGENIC
SBS Chr11 422700 G-T Hetero INTERGENIC
SBS Chr11 1956948 G-A Hetero UTR_3_PRIME
SBS Chr11 15099424 G-A Hetero INTERGENIC
SBS Chr11 16481402 G-T Hetero INTERGENIC
SBS Chr11 18599054 G-T Hetero INTERGENIC
SBS Chr12 11458303 G-T Hetero INTERGENIC
SBS Chr12 15617651 T-G Homo INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 9353 9365 12
Deletion Chr5 128459 128460 1
Deletion Chr8 407717 407718 1
Deletion Chr6 3538231 3538250 19
Deletion Chr3 4673826 4673832 6
Deletion Chr6 6118434 6118438 4
Deletion Chr12 6431890 6431906 16
Deletion Chr6 8008866 8008870 4
Deletion Chr3 9631994 9631997 3
Deletion Chr9 10023283 10023288 5
Deletion Chr11 11663177 11663183 6
Deletion Chr11 12346692 12346695 3
Deletion Chr2 12777222 12777226 4 OsKitaake02g142900
Deletion Chr11 13408217 13408219 2
Deletion Chr8 13514747 13514749 2
Deletion Chr12 17434760 17434761 1
Deletion Chr1 18006742 18006746 4
Deletion Chr10 19935409 19935410 1
Deletion Chr6 21815001 21840000 24999 OsKitaake06g192400
Deletion Chr5 21844179 21844189 10
Deletion Chr7 21971851 21971856 5
Deletion Chr4 22871960 22871965 5
Deletion Chr3 24121888 24121896 8
Deletion Chr5 24326397 24326420 23
Deletion Chr3 25544999 25545001 2
Deletion Chr6 26801600 26801607 7 OsKitaake06g240000
Deletion Chr1 27262310 27262343 33
Deletion Chr7 29459432 29459445 13
Deletion Chr4 32448652 32448659 7 OsKitaake04g259700
Deletion Chr1 37169411 37169412 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 10699739 10699742 2
Insertion Chr5 821856 821859 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 3609583 3724467 OsKitaake11g049800
Inversion Chr8 23145207 23393130 2
Inversion Chr8 23145221 23393133 2

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 14765722 Chr2 20436039
Translocation Chr11 14765740 Chr2 20442885
Translocation Chr2 29587326 Chr1 9477833

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4217897	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g056500
SBS	Chr1	28598100	A-T	Homo	INTERGENIC
SBS	Chr1	32445106	T-A	Homo	INTERGENIC
SBS	Chr2	7802226	A-G	Homo	INTRON
SBS	Chr2	16358747	C-A	Homo	INTERGENIC
SBS	Chr2	33241945	G-A	Homo	INTERGENIC
SBS	Chr2	36540121	T-G	Homo	INTERGENIC
SBS	Chr3	1469654	C-T	Homo	INTERGENIC
SBS	Chr3	28847672	G-A	Hetero	INTERGENIC
SBS	Chr3	32136036	T-C	Homo	INTERGENIC
SBS	Chr4	15489410	C-G	Homo	INTERGENIC
SBS	Chr4	27089267	C-T	Hetero	INTERGENIC
SBS	Chr4	28863063	G-A	Hetero	INTERGENIC
SBS	Chr4	29180540	C-T	Hetero	INTERGENIC
SBS	Chr4	30469328	C-T	Hetero	INTERGENIC
SBS	Chr4	30469329	T-C	Hetero	INTERGENIC
SBS	Chr4	34947210	G-A	Hetero	INTRON
SBS	Chr5	4682027	G-A	Hetero	INTERGENIC
SBS	Chr5	13625810	G-A	Hetero	INTERGENIC
SBS	Chr5	21034005	C-T	Hetero	INTERGENIC
SBS	Chr6	14355169	A-C	Homo	INTERGENIC
SBS	Chr7	13320761	A-T	Hetero	INTERGENIC
SBS	Chr8	4101506	G-A	Homo	INTERGENIC
SBS	Chr8	6190754	C-T	Homo	INTRON
SBS	Chr9	1600730	A-G	Homo	INTRON
SBS	Chr9	18252136	T-A	Hetero	STOP_GAINED	OsKitaake09g141600
SBS	Chr11	253029	T-C	Hetero	INTERGENIC
SBS	Chr11	422700	G-T	Hetero	INTERGENIC
SBS	Chr11	1956948	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	15099424	G-A	Hetero	INTERGENIC
SBS	Chr11	16481402	G-T	Hetero	INTERGENIC
SBS	Chr11	18599054	G-T	Hetero	INTERGENIC
SBS	Chr12	11458303	G-T	Hetero	INTERGENIC
SBS	Chr12	15617651	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	9353	9365	12
Deletion	Chr5	128459	128460	1
Deletion	Chr8	407717	407718	1
Deletion	Chr6	3538231	3538250	19
Deletion	Chr3	4673826	4673832	6
Deletion	Chr6	6118434	6118438	4
Deletion	Chr12	6431890	6431906	16
Deletion	Chr6	8008866	8008870	4
Deletion	Chr3	9631994	9631997	3
Deletion	Chr9	10023283	10023288	5
Deletion	Chr11	11663177	11663183	6
Deletion	Chr11	12346692	12346695	3
Deletion	Chr2	12777222	12777226	4	OsKitaake02g142900
Deletion	Chr11	13408217	13408219	2
Deletion	Chr8	13514747	13514749	2
Deletion	Chr12	17434760	17434761	1
Deletion	Chr1	18006742	18006746	4
Deletion	Chr10	19935409	19935410	1
Deletion	Chr6	21815001	21840000	24999	OsKitaake06g192400
Deletion	Chr5	21844179	21844189	10
Deletion	Chr7	21971851	21971856	5
Deletion	Chr4	22871960	22871965	5
Deletion	Chr3	24121888	24121896	8
Deletion	Chr5	24326397	24326420	23
Deletion	Chr3	25544999	25545001	2
Deletion	Chr6	26801600	26801607	7	OsKitaake06g240000
Deletion	Chr1	27262310	27262343	33
Deletion	Chr7	29459432	29459445	13
Deletion	Chr4	32448652	32448659	7	OsKitaake04g259700
Deletion	Chr1	37169411	37169412	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	3609583	3724467	OsKitaake11g049800
Inversion	Chr8	23145207	23393130	2
Inversion	Chr8	23145221	23393133	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes